miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27634 5' -55.3 NC_005882.1 + 3362 1.05 0.001011
Target:  5'- gACGCGAGACGCACUCCGCGUCGAAAAc -3'
miRNA:   3'- -UGCGCUCUGCGUGAGGCGCAGCUUUU- -5'
27634 5' -55.3 NC_005882.1 + 17274 0.75 0.173852
Target:  5'- cGCGCGGGcaagccguuccugcaGCGCG-UCCGCGUCGAGGc -3'
miRNA:   3'- -UGCGCUC---------------UGCGUgAGGCGCAGCUUUu -5'
27634 5' -55.3 NC_005882.1 + 5225 0.75 0.181821
Target:  5'- gGCGCGAGACGUACUUCGuCGUUc---- -3'
miRNA:   3'- -UGCGCUCUGCGUGAGGC-GCAGcuuuu -5'
27634 5' -55.3 NC_005882.1 + 8405 0.74 0.197635
Target:  5'- cGCGCGAGcgGCGCAauCUCaGCGUCGAAc- -3'
miRNA:   3'- -UGCGCUC--UGCGU--GAGgCGCAGCUUuu -5'
27634 5' -55.3 NC_005882.1 + 17940 0.7 0.352683
Target:  5'- uGCGCGAGGuCGCGacgUUCCGCacGUCGAc-- -3'
miRNA:   3'- -UGCGCUCU-GCGU---GAGGCG--CAGCUuuu -5'
27634 5' -55.3 NC_005882.1 + 30249 0.7 0.370408
Target:  5'- cGCGCGAagccgggcuucGACGCACUgaCCGUGcCGAAc- -3'
miRNA:   3'- -UGCGCU-----------CUGCGUGA--GGCGCaGCUUuu -5'
27634 5' -55.3 NC_005882.1 + 22867 0.69 0.417305
Target:  5'- uGCGCGAGuuuUGCACggcccguugCCGCGUCa---- -3'
miRNA:   3'- -UGCGCUCu--GCGUGa--------GGCGCAGcuuuu -5'
27634 5' -55.3 NC_005882.1 + 34592 0.69 0.42711
Target:  5'- uCGCG-GAUGCGCUCaC-CGUCGGAAc -3'
miRNA:   3'- uGCGCuCUGCGUGAG-GcGCAGCUUUu -5'
27634 5' -55.3 NC_005882.1 + 20180 0.69 0.42711
Target:  5'- cGCGCGcuGCGCGC-CCG-GUCGAAu- -3'
miRNA:   3'- -UGCGCucUGCGUGaGGCgCAGCUUuu -5'
27634 5' -55.3 NC_005882.1 + 17162 0.68 0.437051
Target:  5'- gGCGCGAccaGCGC-CUgCGCGUCGGc-- -3'
miRNA:   3'- -UGCGCUc--UGCGuGAgGCGCAGCUuuu -5'
27634 5' -55.3 NC_005882.1 + 15760 0.68 0.437051
Target:  5'- uCGCGGcGGCGcCGCUCCaGCGUcCGAAu- -3'
miRNA:   3'- uGCGCU-CUGC-GUGAGG-CGCA-GCUUuu -5'
27634 5' -55.3 NC_005882.1 + 17203 0.68 0.441065
Target:  5'- gACGCG-GACGCGCUgcaggaacggcuugcCCGCG-CGAu-- -3'
miRNA:   3'- -UGCGCuCUGCGUGA---------------GGCGCaGCUuuu -5'
27634 5' -55.3 NC_005882.1 + 11961 0.68 0.447124
Target:  5'- cCGcCGAGGCGCugGCUaCCGCGcCGAGc- -3'
miRNA:   3'- uGC-GCUCUGCG--UGA-GGCGCaGCUUuu -5'
27634 5' -55.3 NC_005882.1 + 15951 0.68 0.467648
Target:  5'- aGCGCGaAGAaaucaaugcuuCGCGC-CCGCGUCGcGAu -3'
miRNA:   3'- -UGCGC-UCU-----------GCGUGaGGCGCAGCuUUu -5'
27634 5' -55.3 NC_005882.1 + 24207 0.68 0.47809
Target:  5'- gACGUauGGCGCACaaggCCGCGUgCGGGAAg -3'
miRNA:   3'- -UGCGcuCUGCGUGa---GGCGCA-GCUUUU- -5'
27634 5' -55.3 NC_005882.1 + 6706 0.67 0.488646
Target:  5'- cACGcCGAGACGCACggCGCGcCGc--- -3'
miRNA:   3'- -UGC-GCUCUGCGUGagGCGCaGCuuuu -5'
27634 5' -55.3 NC_005882.1 + 28277 0.67 0.510076
Target:  5'- cCGCGcAGGCGguCUCCaGCGUCa---- -3'
miRNA:   3'- uGCGC-UCUGCguGAGG-CGCAGcuuuu -5'
27634 5' -55.3 NC_005882.1 + 16761 0.67 0.510076
Target:  5'- uGCGCG-GACGCGC---GCGUCGAc-- -3'
miRNA:   3'- -UGCGCuCUGCGUGaggCGCAGCUuuu -5'
27634 5' -55.3 NC_005882.1 + 26631 0.67 0.520938
Target:  5'- cACGCGAcGGuCGCcaGCUCCGCG-CGGc-- -3'
miRNA:   3'- -UGCGCU-CU-GCG--UGAGGCGCaGCUuuu -5'
27634 5' -55.3 NC_005882.1 + 1885 0.67 0.520938
Target:  5'- cCGCGAGACGC---UCGCGgccagCGAAAGu -3'
miRNA:   3'- uGCGCUCUGCGugaGGCGCa----GCUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.