Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27635 | 3' | -60 | NC_005882.1 | + | 27873 | 0.66 | 0.367396 |
|
Target: 5'- aCGCgCGGcGCUCGCGcuucGCGAGcaggUCGUCg -3' miRNA: 3'- -GCGgGUC-CGGGCGC----CGCUCua--AGUAG- -5' |
|||||||
| 27635 | 3' | -60 | NC_005882.1 | + | 3317 | 0.67 | 0.310159 |
|
Target: 5'- aGCCCAGGCCgCGCaGCGcccgcgcgcaAGcGUUCAg- -3' miRNA: 3'- gCGGGUCCGG-GCGcCGC----------UC-UAAGUag -5' |
|||||||
| 27635 | 3' | -60 | NC_005882.1 | + | 12346 | 0.67 | 0.295103 |
|
Target: 5'- aGCCCAGGCcgCCGUuauaGGCcgacAGcgUCAUCg -3' miRNA: 3'- gCGGGUCCG--GGCG----CCGc---UCuaAGUAG- -5' |
|||||||
| 27635 | 3' | -60 | NC_005882.1 | + | 32121 | 0.67 | 0.287791 |
|
Target: 5'- uGCCgCcGGCCUGgGGCGcGAUaUCGUCc -3' miRNA: 3'- gCGG-GuCCGGGCgCCGCuCUA-AGUAG- -5' |
|||||||
| 27635 | 3' | -60 | NC_005882.1 | + | 6353 | 0.68 | 0.259968 |
|
Target: 5'- gGCCCA-GCUCGCGGC-AGGccgCGUCg -3' miRNA: 3'- gCGGGUcCGGGCGCCGcUCUaa-GUAG- -5' |
|||||||
| 27635 | 3' | -60 | NC_005882.1 | + | 8841 | 0.69 | 0.22832 |
|
Target: 5'- aGCCC-GGUCauCGGCGAGAccucgcUUCGUCa -3' miRNA: 3'- gCGGGuCCGGgcGCCGCUCU------AAGUAG- -5' |
|||||||
| 27635 | 3' | -60 | NC_005882.1 | + | 23279 | 0.69 | 0.216601 |
|
Target: 5'- gCGCCCGGccagcGCCUGC-GCGAGcgUCGUg -3' miRNA: 3'- -GCGGGUC-----CGGGCGcCGCUCuaAGUAg -5' |
|||||||
| 27635 | 3' | -60 | NC_005882.1 | + | 3545 | 0.7 | 0.199992 |
|
Target: 5'- uCGCCgCGGGCCUG-GGCGuGccggUCGUCa -3' miRNA: 3'- -GCGG-GUCCGGGCgCCGCuCua--AGUAG- -5' |
|||||||
| 27635 | 3' | -60 | NC_005882.1 | + | 32175 | 0.71 | 0.170082 |
|
Target: 5'- gCGcCCCAGGCCgGCGGCacGAucGGUUCGg- -3' miRNA: 3'- -GC-GGGUCCGGgCGCCG--CU--CUAAGUag -5' |
|||||||
| 27635 | 3' | -60 | NC_005882.1 | + | 3491 | 1.1 | 0.000159 |
|
Target: 5'- aCGCCCAGGCCCGCGGCGAGAUUCAUCg -3' miRNA: 3'- -GCGGGUCCGGGCGCCGCUCUAAGUAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home