miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27637 5' -58.2 NC_005882.1 + 35827 0.66 0.412581
Target:  5'- gUUGCGGUCaGcgucGCGAUCGCUGCCUu -3'
miRNA:   3'- aAGUGCUAGaCu---CGCUGGCGGCGGAc -5'
27637 5' -58.2 NC_005882.1 + 12317 0.66 0.412581
Target:  5'- aUCGCGAUCagcGcGUGACgGCUGCCg- -3'
miRNA:   3'- aAGUGCUAGa--CuCGCUGgCGGCGGac -5'
27637 5' -58.2 NC_005882.1 + 16000 0.66 0.40311
Target:  5'- -gCACG-UCggcggGuGCGugCGCCGCCg- -3'
miRNA:   3'- aaGUGCuAGa----CuCGCugGCGGCGGac -5'
27637 5' -58.2 NC_005882.1 + 3902 0.66 0.40311
Target:  5'- aUCACGAggcaaugCUGGuaGcCCGCCGCgUGg -3'
miRNA:   3'- aAGUGCUa------GACUcgCuGGCGGCGgAC- -5'
27637 5' -58.2 NC_005882.1 + 26362 0.66 0.397494
Target:  5'- --uGCGAUCUGcAGCGAgCCuucguagcucgaauaGCCGCCg- -3'
miRNA:   3'- aagUGCUAGAC-UCGCU-GG---------------CGGCGGac -5'
27637 5' -58.2 NC_005882.1 + 26882 0.66 0.392852
Target:  5'- uUUCGCGcgcUCUGggccgguGGCGGCUcCCGCCUGu -3'
miRNA:   3'- -AAGUGCu--AGAC-------UCGCUGGcGGCGGAC- -5'
27637 5' -58.2 NC_005882.1 + 29259 0.67 0.375539
Target:  5'- cUCGuCGAUCUcGaAGCGGCCGCaCGCgaGc -3'
miRNA:   3'- aAGU-GCUAGA-C-UCGCUGGCG-GCGgaC- -5'
27637 5' -58.2 NC_005882.1 + 15921 0.67 0.357013
Target:  5'- gUCGCGAUCUGcgacgaaAGCGACUuguccgGCuCGCCg- -3'
miRNA:   3'- aAGUGCUAGAC-------UCGCUGG------CG-GCGGac -5'
27637 5' -58.2 NC_005882.1 + 25275 0.67 0.340812
Target:  5'- aUCGCGAUUgccGGCGucguGCuCGCCGUCUGg -3'
miRNA:   3'- aAGUGCUAGac-UCGC----UG-GCGGCGGAC- -5'
27637 5' -58.2 NC_005882.1 + 14199 0.68 0.293195
Target:  5'- -gCACGcgCgGaAGCGGCCGCCGCg-- -3'
miRNA:   3'- aaGUGCuaGaC-UCGCUGGCGGCGgac -5'
27637 5' -58.2 NC_005882.1 + 3259 0.7 0.238007
Target:  5'- aUCugGAUCgucGGcCGGCCGCCGUCg- -3'
miRNA:   3'- aAGugCUAGac-UC-GCUGGCGGCGGac -5'
27637 5' -58.2 NC_005882.1 + 16966 0.7 0.225641
Target:  5'- --uGCGAcCUggacGAGCGGCCGCUGCCg- -3'
miRNA:   3'- aagUGCUaGA----CUCGCUGGCGGCGGac -5'
27637 5' -58.2 NC_005882.1 + 26571 0.7 0.213824
Target:  5'- -gCGCGGagCUG-GCGACCGUCGCgUGg -3'
miRNA:   3'- aaGUGCUa-GACuCGCUGGCGGCGgAC- -5'
27637 5' -58.2 NC_005882.1 + 23439 0.74 0.122477
Target:  5'- gUCACGggCgucGAGCGGCCGCUGUCg- -3'
miRNA:   3'- aAGUGCuaGa--CUCGCUGGCGGCGGac -5'
27637 5' -58.2 NC_005882.1 + 4563 1.05 0.000521
Target:  5'- aUUCACGAUCUGAGCGACCGCCGCCUGc -3'
miRNA:   3'- -AAGUGCUAGACUCGCUGGCGGCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.