miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27638 3' -57.6 NC_005882.1 + 3695 0.66 0.44072
Target:  5'- aGGCGCgg--GCcGUCgAGCGGGGCCa -3'
miRNA:   3'- aUCGCGacaaCGuCGG-UCGCCUUGGc -5'
27638 3' -57.6 NC_005882.1 + 27665 0.66 0.430745
Target:  5'- cUGGCGCaucgGUAGCCGGCucuGGGAUCa -3'
miRNA:   3'- -AUCGCGacaaCGUCGGUCG---CCUUGGc -5'
27638 3' -57.6 NC_005882.1 + 33873 0.66 0.428765
Target:  5'- cUAGCGgcuaacaaacCUGggcaauugaacgUGCcuGCCAGCGGAGCUGa -3'
miRNA:   3'- -AUCGC----------GACa-----------ACGu-CGGUCGCCUUGGC- -5'
27638 3' -57.6 NC_005882.1 + 28545 0.66 0.420903
Target:  5'- cAGCGCUGgcgacaGCuucGCCAGUGGAucAgCGg -3'
miRNA:   3'- aUCGCGACaa----CGu--CGGUCGCCU--UgGC- -5'
27638 3' -57.6 NC_005882.1 + 29825 0.66 0.411198
Target:  5'- cAGCGUUGccUUGgAGCCGgcccguGCGGAaaGCCGc -3'
miRNA:   3'- aUCGCGAC--AACgUCGGU------CGCCU--UGGC- -5'
27638 3' -57.6 NC_005882.1 + 33032 0.67 0.392211
Target:  5'- gUAGCGCg--UGCGGCC-GCcGAGCUGc -3'
miRNA:   3'- -AUCGCGacaACGUCGGuCGcCUUGGC- -5'
27638 3' -57.6 NC_005882.1 + 21889 0.67 0.364823
Target:  5'- cAGCGCUG--GCAGCUugacGCGcAGCCGg -3'
miRNA:   3'- aUCGCGACaaCGUCGGu---CGCcUUGGC- -5'
27638 3' -57.6 NC_005882.1 + 23011 0.67 0.355992
Target:  5'- uUGGcCGCcGUcGCAcCCGGCGGAAUCGu -3'
miRNA:   3'- -AUC-GCGaCAaCGUcGGUCGCCUUGGC- -5'
27638 3' -57.6 NC_005882.1 + 3860 0.68 0.338785
Target:  5'- aAGCuGCUGUccaucauccUGauCGGCCAGCcGGAGCUGa -3'
miRNA:   3'- aUCG-CGACA---------AC--GUCGGUCG-CCUUGGC- -5'
27638 3' -57.6 NC_005882.1 + 21085 0.68 0.336257
Target:  5'- gUGGCGUgugcGCAGCCGGCGcGAaggcgcucggcguuGCCGa -3'
miRNA:   3'- -AUCGCGacaaCGUCGGUCGC-CU--------------UGGC- -5'
27638 3' -57.6 NC_005882.1 + 27631 0.68 0.322191
Target:  5'- cAGCGCaucaacGCAGCUcggGGCGGAucGCCGg -3'
miRNA:   3'- aUCGCGacaa--CGUCGG---UCGCCU--UGGC- -5'
27638 3' -57.6 NC_005882.1 + 35380 0.68 0.322191
Target:  5'- aGGCGCUucugGCAgGCCuacCGGAGCCGa -3'
miRNA:   3'- aUCGCGAcaa-CGU-CGGuc-GCCUUGGC- -5'
27638 3' -57.6 NC_005882.1 + 23227 0.7 0.248384
Target:  5'- aGGCGCUGgccggGCgcgGGCCGGCGG-GCaCGa -3'
miRNA:   3'- aUCGCGACaa---CG---UCGGUCGCCuUG-GC- -5'
27638 3' -57.6 NC_005882.1 + 12325 0.74 0.116609
Target:  5'- cAGCGC-GUgacgGCuGCCGGCGGcGCCGa -3'
miRNA:   3'- aUCGCGaCAa---CGuCGGUCGCCuUGGC- -5'
27638 3' -57.6 NC_005882.1 + 4778 1.08 0.000319
Target:  5'- aUAGCGCUGUUGCAGCCAGCGGAACCGg -3'
miRNA:   3'- -AUCGCGACAACGUCGGUCGCCUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.