miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27638 5' -58.1 NC_005882.1 + 31456 0.66 0.48393
Target:  5'- cGUCGucuuCGCgGGCuGCgcCGGCAGCc- -3'
miRNA:   3'- -CAGCu---GCGgCCGuCGaaGCUGUCGcc -5'
27638 5' -58.1 NC_005882.1 + 15392 0.66 0.48393
Target:  5'- aUCGgcucccGCGCUucacgGGCGGCgccuUCGACGcGCGGg -3'
miRNA:   3'- cAGC------UGCGG-----CCGUCGa---AGCUGU-CGCC- -5'
27638 5' -58.1 NC_005882.1 + 29996 0.66 0.48393
Target:  5'- cUCGGCGCUcgccguccaGGcCGGCaaaGGCGGCGGc -3'
miRNA:   3'- cAGCUGCGG---------CC-GUCGaagCUGUCGCC- -5'
27638 5' -58.1 NC_005882.1 + 12536 0.66 0.48393
Target:  5'- uGUCG-CGgCGGCGGC--CGGCGcuGCGGc -3'
miRNA:   3'- -CAGCuGCgGCCGUCGaaGCUGU--CGCC- -5'
27638 5' -58.1 NC_005882.1 + 19141 0.66 0.467659
Target:  5'- -cCGGCGCCGacgaguucggcgaauGCGGgaUCGACcugGGUGGg -3'
miRNA:   3'- caGCUGCGGC---------------CGUCgaAGCUG---UCGCC- -5'
27638 5' -58.1 NC_005882.1 + 22644 0.66 0.463636
Target:  5'- cGUCGACGCgGcGCAG-UUCGgcccGCAGCu- -3'
miRNA:   3'- -CAGCUGCGgC-CGUCgAAGC----UGUCGcc -5'
27638 5' -58.1 NC_005882.1 + 19552 0.66 0.463636
Target:  5'- -cCGACGCgcaGGCgcgugAGCgcaaGGCGGCGGa -3'
miRNA:   3'- caGCUGCGg--CCG-----UCGaag-CUGUCGCC- -5'
27638 5' -58.1 NC_005882.1 + 6259 0.66 0.46063
Target:  5'- aGUCGACGCguaagaaCGGCaAGCgccuguauacggUCGgugacGCGGCGGa -3'
miRNA:   3'- -CAGCUGCG-------GCCG-UCGa-----------AGC-----UGUCGCC- -5'
27638 5' -58.1 NC_005882.1 + 28316 0.66 0.457634
Target:  5'- -gCGGcCGCCGGCGGCaccuugggcuguaCGGcCGGCGGc -3'
miRNA:   3'- caGCU-GCGGCCGUCGaa-----------GCU-GUCGCC- -5'
27638 5' -58.1 NC_005882.1 + 14809 0.66 0.453657
Target:  5'- uUCGACGCaCGaCGGCgUCGACAacGCGu -3'
miRNA:   3'- cAGCUGCG-GCcGUCGaAGCUGU--CGCc -5'
27638 5' -58.1 NC_005882.1 + 4597 0.66 0.443796
Target:  5'- -aCGGCguaugGCCGcGCAGCcUCGACGaccucgaccuGCGGg -3'
miRNA:   3'- caGCUG-----CGGC-CGUCGaAGCUGU----------CGCC- -5'
27638 5' -58.1 NC_005882.1 + 21288 0.66 0.442817
Target:  5'- -gCGGCGaCGGCGGCcggCGACGucauccgcauccuGCGGg -3'
miRNA:   3'- caGCUGCgGCCGUCGaa-GCUGU-------------CGCC- -5'
27638 5' -58.1 NC_005882.1 + 12131 0.66 0.434057
Target:  5'- -aCGACGCUGaCGGCguccgcgCGcCAGCGGc -3'
miRNA:   3'- caGCUGCGGCcGUCGaa-----GCuGUCGCC- -5'
27638 5' -58.1 NC_005882.1 + 17865 0.66 0.434057
Target:  5'- -gCGGCaCCGGCAGCcccagcCGuuCGGCGGg -3'
miRNA:   3'- caGCUGcGGCCGUCGaa----GCu-GUCGCC- -5'
27638 5' -58.1 NC_005882.1 + 634 0.66 0.434057
Target:  5'- gGUCGGCGCCgaugucGGcCAGCU-CGAuCAGUGc -3'
miRNA:   3'- -CAGCUGCGG------CC-GUCGAaGCU-GUCGCc -5'
27638 5' -58.1 NC_005882.1 + 35911 0.66 0.43309
Target:  5'- uUCGGCGugacuuuCCGGCAGaa--GGCAGCGa -3'
miRNA:   3'- cAGCUGC-------GGCCGUCgaagCUGUCGCc -5'
27638 5' -58.1 NC_005882.1 + 31532 0.67 0.424443
Target:  5'- cUCGuCGCCGGcCAGUUgucgaUCGAC-GUGGc -3'
miRNA:   3'- cAGCuGCGGCC-GUCGA-----AGCUGuCGCC- -5'
27638 5' -58.1 NC_005882.1 + 6397 0.67 0.397298
Target:  5'- -cCGugGCCGGCcGCgcgcgcugccugggCGACAGCc- -3'
miRNA:   3'- caGCugCGGCCGuCGaa------------GCUGUCGcc -5'
27638 5' -58.1 NC_005882.1 + 31522 0.67 0.387298
Target:  5'- cUCGACacgcguGCCGGCuGCaaucagcaggUUCGACGGCa- -3'
miRNA:   3'- cAGCUG------CGGCCGuCG----------AAGCUGUCGcc -5'
27638 5' -58.1 NC_005882.1 + 22687 0.67 0.387298
Target:  5'- cGUCGACGUCGGaCAGCgaCuGCAcCGGc -3'
miRNA:   3'- -CAGCUGCGGCC-GUCGaaGcUGUcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.