miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27639 5' -51.2 NC_005882.1 + 25434 0.66 0.861243
Target:  5'- gCGAGGcauaccCGCCugGgggacGCGAUGGcGCGGGc -3'
miRNA:   3'- -GCUUUa-----GCGGugCa----UGCUACU-CGCCU- -5'
27639 5' -51.2 NC_005882.1 + 22888 0.66 0.852512
Target:  5'- aCGAGAuUCGCCGCGgcCgGAUGcGCGa- -3'
miRNA:   3'- -GCUUU-AGCGGUGCauG-CUACuCGCcu -5'
27639 5' -51.2 NC_005882.1 + 3281 0.66 0.852512
Target:  5'- gCGAAGUCGuCCgACGUgcugcGCGAgcgugcGGGCGGc -3'
miRNA:   3'- -GCUUUAGC-GG-UGCA-----UGCUa-----CUCGCCu -5'
27639 5' -51.2 NC_005882.1 + 28048 0.66 0.843525
Target:  5'- gCGAAGcUGCgCGCG-GCGGUGAGCGc- -3'
miRNA:   3'- -GCUUUaGCG-GUGCaUGCUACUCGCcu -5'
27639 5' -51.2 NC_005882.1 + 33120 0.66 0.843525
Target:  5'- cCGAcuUCGUCGCGUacuGCGAau-GCGGGu -3'
miRNA:   3'- -GCUuuAGCGGUGCA---UGCUacuCGCCU- -5'
27639 5' -51.2 NC_005882.1 + 7868 0.66 0.843525
Target:  5'- gCGGuauGUCGCgACGcuugagGCGAUGGgguucGCGGAg -3'
miRNA:   3'- -GCUu--UAGCGgUGCa-----UGCUACU-----CGCCU- -5'
27639 5' -51.2 NC_005882.1 + 34382 0.66 0.834295
Target:  5'- uCGAuGUCGCUuccugcaucggGCGU--GAUGAGCGGu -3'
miRNA:   3'- -GCUuUAGCGG-----------UGCAugCUACUCGCCu -5'
27639 5' -51.2 NC_005882.1 + 26786 0.66 0.82483
Target:  5'- cCGAccaCGCCGCGgaucgGCcggGAUGGGCGGc -3'
miRNA:   3'- -GCUuuaGCGGUGCa----UG---CUACUCGCCu -5'
27639 5' -51.2 NC_005882.1 + 10527 0.68 0.75733
Target:  5'- aGGGcgUGCCgACGcgugacagcgucgacUACGGUGAGCGGc -3'
miRNA:   3'- gCUUuaGCGG-UGC---------------AUGCUACUCGCCu -5'
27639 5' -51.2 NC_005882.1 + 22948 0.68 0.742098
Target:  5'- aCGAu-UCGCCGgGUGCGAc-GGCGGc -3'
miRNA:   3'- -GCUuuAGCGGUgCAUGCUacUCGCCu -5'
27639 5' -51.2 NC_005882.1 + 23414 0.68 0.742098
Target:  5'- gCGAAGgccCGCCGCacGCGAUgaGAGCGGc -3'
miRNA:   3'- -GCUUUa--GCGGUGcaUGCUA--CUCGCCu -5'
27639 5' -51.2 NC_005882.1 + 2490 0.69 0.651545
Target:  5'- gCGcGAUCGCCuCGUucGCGAgcuGGCGGAc -3'
miRNA:   3'- -GCuUUAGCGGuGCA--UGCUac-UCGCCU- -5'
27639 5' -51.2 NC_005882.1 + 25076 0.69 0.650392
Target:  5'- aCGAuggccuuGAUCGCCGCc-GCGAUGAGguaGGAg -3'
miRNA:   3'- -GCU-------UUAGCGGUGcaUGCUACUCg--CCU- -5'
27639 5' -51.2 NC_005882.1 + 1915 0.71 0.570997
Target:  5'- uCGAuGUCGCgguuaCGCGUugGCGAUgucGAGCGGAa -3'
miRNA:   3'- -GCUuUAGCG-----GUGCA--UGCUA---CUCGCCU- -5'
27639 5' -51.2 NC_005882.1 + 5141 1.1 0.001491
Target:  5'- cCGAAAUCGCCACGUACGAUGAGCGGAa -3'
miRNA:   3'- -GCUUUAGCGGUGCAUGCUACUCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.