Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2764 | 3' | -43.1 | NC_001491.2 | + | 30372 | 0.66 | 1 |
Target: 5'- aCCGCu--AUCAacGGUACUUggaCGGAGAGa -3' miRNA: 3'- -GGCGuuuUAGUc-UUAUGAA---GUCUCUC- -5' |
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2764 | 3' | -43.1 | NC_001491.2 | + | 30469 | 0.66 | 1 |
Target: 5'- aCGCGGAuucugaacaugcgCGGGAUGCUggcCAGAGAc -3' miRNA: 3'- gGCGUUUua-----------GUCUUAUGAa--GUCUCUc -5' |
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2764 | 3' | -43.1 | NC_001491.2 | + | 53259 | 0.66 | 1 |
Target: 5'- gCCGCAGGAUCuGGcgcUACUUCuGAaaacgGAGg -3' miRNA: 3'- -GGCGUUUUAGuCUu--AUGAAGuCU-----CUC- -5' |
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2764 | 3' | -43.1 | NC_001491.2 | + | 97545 | 0.68 | 0.999996 |
Target: 5'- cCCGCAGAcgCGGcggg--UCGGAGGGu -3' miRNA: 3'- -GGCGUUUuaGUCuuaugaAGUCUCUC- -5' |
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2764 | 3' | -43.1 | NC_001491.2 | + | 15761 | 0.7 | 0.999938 |
Target: 5'- gCGCGAGGUCuGggUGCUUguggcugugCGGGGAc -3' miRNA: 3'- gGCGUUUUAGuCuuAUGAA---------GUCUCUc -5' |
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2764 | 3' | -43.1 | NC_001491.2 | + | 53352 | 0.71 | 0.999813 |
Target: 5'- gCCGC---GUCAGAG-ACUUCGGAGu- -3' miRNA: 3'- -GGCGuuuUAGUCUUaUGAAGUCUCuc -5' |
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2764 | 3' | -43.1 | NC_001491.2 | + | 144807 | 0.72 | 0.999604 |
Target: 5'- uCCGCGgggcucggGAGUCGGAG-ACggCGGAGGGa -3' miRNA: 3'- -GGCGU--------UUUAGUCUUaUGaaGUCUCUC- -5' |
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2764 | 3' | -43.1 | NC_001491.2 | + | 88984 | 0.73 | 0.999027 |
Target: 5'- gCUGCAAuguuuggUAGggUGCUgggCAGGGAGa -3' miRNA: 3'- -GGCGUUuua----GUCuuAUGAa--GUCUCUC- -5' |
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2764 | 3' | -43.1 | NC_001491.2 | + | 1073 | 0.73 | 0.998802 |
Target: 5'- -aGUAAAGUUAGAuUACUUCccuAGAGGGg -3' miRNA: 3'- ggCGUUUUAGUCUuAUGAAG---UCUCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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