miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27640 3' -50.8 NC_005882.1 + 36348 0.66 0.82133
Target:  5'- --gGU-CGUG-UCAUCGGCUcgaccgaaUCUCGCa -3'
miRNA:   3'- uaaCGcGCACuAGUAGUCGA--------AGAGCG- -5'
27640 3' -50.8 NC_005882.1 + 28043 0.66 0.811315
Target:  5'- --aGCGCGauccGAaucUCGUCgAGCUUgUCGCc -3'
miRNA:   3'- uaaCGCGCa---CU---AGUAG-UCGAAgAGCG- -5'
27640 3' -50.8 NC_005882.1 + 11091 0.66 0.811315
Target:  5'- ---aCGCGgacGAUCAgcucgcaaaggUCGGCUUCUgGCa -3'
miRNA:   3'- uaacGCGCa--CUAGU-----------AGUCGAAGAgCG- -5'
27640 3' -50.8 NC_005882.1 + 11841 0.66 0.811315
Target:  5'- --cGCGCgGUGAUCGuccUCGGCgUCguagucggcgUCGCg -3'
miRNA:   3'- uaaCGCG-CACUAGU---AGUCGaAG----------AGCG- -5'
27640 3' -50.8 NC_005882.1 + 20608 0.66 0.801081
Target:  5'- -cUGCGgGUGGgccuUCAGCgUCUUGUa -3'
miRNA:   3'- uaACGCgCACUagu-AGUCGaAGAGCG- -5'
27640 3' -50.8 NC_005882.1 + 17153 0.67 0.780015
Target:  5'- --aGCGCcUGcgCGUCGGCaUUCaggUCGCg -3'
miRNA:   3'- uaaCGCGcACuaGUAGUCG-AAG---AGCG- -5'
27640 3' -50.8 NC_005882.1 + 12041 0.68 0.724493
Target:  5'- --cGUGCGuUGcgCGUCAGCUcggCGCg -3'
miRNA:   3'- uaaCGCGC-ACuaGUAGUCGAagaGCG- -5'
27640 3' -50.8 NC_005882.1 + 26234 0.68 0.724493
Target:  5'- aGUUGCGCagauUCGUCacGGCUUCgUCGCc -3'
miRNA:   3'- -UAACGCGcacuAGUAG--UCGAAG-AGCG- -5'
27640 3' -50.8 NC_005882.1 + 16958 0.68 0.689789
Target:  5'- --cGCGCGccGGcuugCGUCAGCUUUuggUCGCg -3'
miRNA:   3'- uaaCGCGCa-CUa---GUAGUCGAAG---AGCG- -5'
27640 3' -50.8 NC_005882.1 + 6488 0.73 0.427857
Target:  5'- --gGCGCGUGAgaaGUCGGCaUC-CGCu -3'
miRNA:   3'- uaaCGCGCACUag-UAGUCGaAGaGCG- -5'
27640 3' -50.8 NC_005882.1 + 5235 1.1 0.001316
Target:  5'- gAUUGCGCGUGAUCAUCAGCUUCUCGCc -3'
miRNA:   3'- -UAACGCGCACUAGUAGUCGAAGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.