miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27640 5' -59.7 NC_005882.1 + 29225 0.65 0.406756
Target:  5'- gGCGCgCCGGCguaGCCGaucuucaGCGucaGCGCGUCGc- -3'
miRNA:   3'- -UGCG-GGCCG---UGGC-------UGC---UGUGCAGCau -5'
27640 5' -59.7 NC_005882.1 + 6586 0.66 0.398505
Target:  5'- gACGUCCcgcaauGGCugCG-UGAUACGUCGg- -3'
miRNA:   3'- -UGCGGG------CCGugGCuGCUGUGCAGCau -5'
27640 5' -59.7 NC_005882.1 + 27533 0.66 0.398505
Target:  5'- uCGCCCagGGCGCCGcaauCGGCAucgggcgcuCGUCGg- -3'
miRNA:   3'- uGCGGG--CCGUGGCu---GCUGU---------GCAGCau -5'
27640 5' -59.7 NC_005882.1 + 26843 0.66 0.398505
Target:  5'- -aGCaCGGCAUUGACGACG-GUCGg- -3'
miRNA:   3'- ugCGgGCCGUGGCUGCUGUgCAGCau -5'
27640 5' -59.7 NC_005882.1 + 23078 0.66 0.398505
Target:  5'- uGCGUucaCGGCGCCGAUGAugucCGCGgcCGUGa -3'
miRNA:   3'- -UGCGg--GCCGUGGCUGCU----GUGCa-GCAU- -5'
27640 5' -59.7 NC_005882.1 + 12326 0.66 0.371788
Target:  5'- aGCGCgugaCGGCuGCCGGCGGCGcCGaUCGg- -3'
miRNA:   3'- -UGCGg---GCCG-UGGCUGCUGU-GC-AGCau -5'
27640 5' -59.7 NC_005882.1 + 13515 0.66 0.371788
Target:  5'- aACGCgCGGC-CCGAgGAaguCGUCGa- -3'
miRNA:   3'- -UGCGgGCCGuGGCUgCUgu-GCAGCau -5'
27640 5' -59.7 NC_005882.1 + 28320 0.66 0.363158
Target:  5'- cUGCgCGGcCGCCGGCGGCACcUUGg- -3'
miRNA:   3'- uGCGgGCC-GUGGCUGCUGUGcAGCau -5'
27640 5' -59.7 NC_005882.1 + 32064 0.66 0.363158
Target:  5'- cGCGUagucgaCCGGCGUCGGCGAUcggACGUCGa- -3'
miRNA:   3'- -UGCG------GGCCGUGGCUGCUG---UGCAGCau -5'
27640 5' -59.7 NC_005882.1 + 17881 0.67 0.354668
Target:  5'- gGCGgCCGGCgACCGccuCGGCACGaCGc- -3'
miRNA:   3'- -UGCgGGCCG-UGGCu--GCUGUGCaGCau -5'
27640 5' -59.7 NC_005882.1 + 26565 0.67 0.354668
Target:  5'- uGCGCCgcgCGGaGCUGGCGAC-CGUCGc- -3'
miRNA:   3'- -UGCGG---GCCgUGGCUGCUGuGCAGCau -5'
27640 5' -59.7 NC_005882.1 + 31074 0.67 0.346319
Target:  5'- -aGCgCGGCucccACCGGCGGauCGCGUCGa- -3'
miRNA:   3'- ugCGgGCCG----UGGCUGCU--GUGCAGCau -5'
27640 5' -59.7 NC_005882.1 + 12609 0.67 0.338111
Target:  5'- cACGCCgGuGCgcuuGCCGGCGACGCGaaggUCGc- -3'
miRNA:   3'- -UGCGGgC-CG----UGGCUGCUGUGC----AGCau -5'
27640 5' -59.7 NC_005882.1 + 5497 0.67 0.338111
Target:  5'- aACGCacagCCGGCAUgGuGCGACGCGUaGUGa -3'
miRNA:   3'- -UGCG----GGCCGUGgC-UGCUGUGCAgCAU- -5'
27640 5' -59.7 NC_005882.1 + 12879 0.67 0.330046
Target:  5'- gGCGCauCCGGCGCCGgGCGGuaUugGcUCGUGa -3'
miRNA:   3'- -UGCG--GGCCGUGGC-UGCU--GugC-AGCAU- -5'
27640 5' -59.7 NC_005882.1 + 34862 0.67 0.330046
Target:  5'- aGCGCaCUGGCcgcauaGCCGGCGgGCAUGUUGg- -3'
miRNA:   3'- -UGCG-GGCCG------UGGCUGC-UGUGCAGCau -5'
27640 5' -59.7 NC_005882.1 + 32043 0.67 0.327654
Target:  5'- gACGCuguacaaggaugCCGGCGCCGACacaacgaucgcgcaGGCACGUaCGg- -3'
miRNA:   3'- -UGCG------------GGCCGUGGCUG--------------CUGUGCA-GCau -5'
27640 5' -59.7 NC_005882.1 + 7357 0.67 0.322123
Target:  5'- cAUGCCCGGaaCAUCGGCGucgguCACgGUCGUc -3'
miRNA:   3'- -UGCGGGCC--GUGGCUGCu----GUG-CAGCAu -5'
27640 5' -59.7 NC_005882.1 + 21110 0.68 0.306707
Target:  5'- gGCGCUCGGCguuGCCGAaaCGACcgccgAUGUCGg- -3'
miRNA:   3'- -UGCGGGCCG---UGGCU--GCUG-----UGCAGCau -5'
27640 5' -59.7 NC_005882.1 + 8841 0.68 0.306707
Target:  5'- -aGCCCGGuCAUCGGCGAgACcUCGc- -3'
miRNA:   3'- ugCGGGCC-GUGGCUGCUgUGcAGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.