Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27640 | 5' | -59.7 | NC_005882.1 | + | 29225 | 0.65 | 0.406756 |
Target: 5'- gGCGCgCCGGCguaGCCGaucuucaGCGucaGCGCGUCGc- -3' miRNA: 3'- -UGCG-GGCCG---UGGC-------UGC---UGUGCAGCau -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 23078 | 0.66 | 0.398505 |
Target: 5'- uGCGUucaCGGCGCCGAUGAugucCGCGgcCGUGa -3' miRNA: 3'- -UGCGg--GCCGUGGCUGCU----GUGCa-GCAU- -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 13515 | 0.66 | 0.371788 |
Target: 5'- aACGCgCGGC-CCGAgGAaguCGUCGa- -3' miRNA: 3'- -UGCGgGCCGuGGCUgCUgu-GCAGCau -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 12326 | 0.66 | 0.371788 |
Target: 5'- aGCGCgugaCGGCuGCCGGCGGCGcCGaUCGg- -3' miRNA: 3'- -UGCGg---GCCG-UGGCUGCUGU-GC-AGCau -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 32064 | 0.66 | 0.363158 |
Target: 5'- cGCGUagucgaCCGGCGUCGGCGAUcggACGUCGa- -3' miRNA: 3'- -UGCG------GGCCGUGGCUGCUG---UGCAGCau -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 28320 | 0.66 | 0.363158 |
Target: 5'- cUGCgCGGcCGCCGGCGGCACcUUGg- -3' miRNA: 3'- uGCGgGCC-GUGGCUGCUGUGcAGCau -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 26843 | 0.66 | 0.398505 |
Target: 5'- -aGCaCGGCAUUGACGACG-GUCGg- -3' miRNA: 3'- ugCGgGCCGUGGCUGCUGUgCAGCau -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 6586 | 0.66 | 0.398505 |
Target: 5'- gACGUCCcgcaauGGCugCG-UGAUACGUCGg- -3' miRNA: 3'- -UGCGGG------CCGugGCuGCUGUGCAGCau -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 27533 | 0.66 | 0.398505 |
Target: 5'- uCGCCCagGGCGCCGcaauCGGCAucgggcgcuCGUCGg- -3' miRNA: 3'- uGCGGG--CCGUGGCu---GCUGU---------GCAGCau -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 31074 | 0.67 | 0.346319 |
Target: 5'- -aGCgCGGCucccACCGGCGGauCGCGUCGa- -3' miRNA: 3'- ugCGgGCCG----UGGCUGCU--GUGCAGCau -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 26565 | 0.67 | 0.354668 |
Target: 5'- uGCGCCgcgCGGaGCUGGCGAC-CGUCGc- -3' miRNA: 3'- -UGCGG---GCCgUGGCUGCUGuGCAGCau -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 17881 | 0.67 | 0.354668 |
Target: 5'- gGCGgCCGGCgACCGccuCGGCACGaCGc- -3' miRNA: 3'- -UGCgGGCCG-UGGCu--GCUGUGCaGCau -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 12609 | 0.67 | 0.338111 |
Target: 5'- cACGCCgGuGCgcuuGCCGGCGACGCGaaggUCGc- -3' miRNA: 3'- -UGCGGgC-CG----UGGCUGCUGUGC----AGCau -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 32043 | 0.67 | 0.327654 |
Target: 5'- gACGCuguacaaggaugCCGGCGCCGACacaacgaucgcgcaGGCACGUaCGg- -3' miRNA: 3'- -UGCG------------GGCCGUGGCUG--------------CUGUGCA-GCau -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 7357 | 0.67 | 0.322123 |
Target: 5'- cAUGCCCGGaaCAUCGGCGucgguCACgGUCGUc -3' miRNA: 3'- -UGCGGGCC--GUGGCUGCu----GUG-CAGCAu -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 34862 | 0.67 | 0.330046 |
Target: 5'- aGCGCaCUGGCcgcauaGCCGGCGgGCAUGUUGg- -3' miRNA: 3'- -UGCG-GGCCG------UGGCUGC-UGUGCAGCau -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 5497 | 0.67 | 0.338111 |
Target: 5'- aACGCacagCCGGCAUgGuGCGACGCGUaGUGa -3' miRNA: 3'- -UGCG----GGCCGUGgC-UGCUGUGCAgCAU- -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 12879 | 0.67 | 0.330046 |
Target: 5'- gGCGCauCCGGCGCCGgGCGGuaUugGcUCGUGa -3' miRNA: 3'- -UGCG--GGCCGUGGC-UGCU--GugC-AGCAU- -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 21110 | 0.68 | 0.306707 |
Target: 5'- gGCGCUCGGCguuGCCGAaaCGACcgccgAUGUCGg- -3' miRNA: 3'- -UGCGGGCCG---UGGCU--GCUG-----UGCAGCau -5' |
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27640 | 5' | -59.7 | NC_005882.1 | + | 8841 | 0.68 | 0.306707 |
Target: 5'- -aGCCCGGuCAUCGGCGAgACcUCGc- -3' miRNA: 3'- ugCGGGCC-GUGGCUGCUgUGcAGCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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