Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27642 | 3' | -55.4 | NC_005882.1 | + | 6417 | 1.12 | 0.000304 |
Target: 5'- uGCCUGGGCGACAGCCACAAUGCGUUCg -3' miRNA: 3'- -CGGACCCGCUGUCGGUGUUACGCAAG- -5' |
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27642 | 3' | -55.4 | NC_005882.1 | + | 27140 | 0.78 | 0.093476 |
Target: 5'- cCCUGGGCGAgCAGCCGCA--GCGggCc -3' miRNA: 3'- cGGACCCGCU-GUCGGUGUuaCGCaaG- -5' |
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27642 | 3' | -55.4 | NC_005882.1 | + | 5210 | 0.74 | 0.191539 |
Target: 5'- aCCUGGGCGGCAucgucacGCCACGGauUGCGc-- -3' miRNA: 3'- cGGACCCGCUGU-------CGGUGUU--ACGCaag -5' |
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27642 | 3' | -55.4 | NC_005882.1 | + | 790 | 0.71 | 0.295682 |
Target: 5'- uGCCUGGGCGGaacugAGCCAUucgaGCGcgUCg -3' miRNA: 3'- -CGGACCCGCUg----UCGGUGuua-CGCa-AG- -5' |
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27642 | 3' | -55.4 | NC_005882.1 | + | 28345 | 0.7 | 0.35314 |
Target: 5'- aCCUGGGCcaaccaggcGCAGuCCGCGAUGCGc-- -3' miRNA: 3'- cGGACCCGc--------UGUC-GGUGUUACGCaag -5' |
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27642 | 3' | -55.4 | NC_005882.1 | + | 15815 | 0.69 | 0.408347 |
Target: 5'- -gCUGGaGCGGCGccGCCGCGAcuUGCGgUCa -3' miRNA: 3'- cgGACC-CGCUGU--CGGUGUU--ACGCaAG- -5' |
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27642 | 3' | -55.4 | NC_005882.1 | + | 29855 | 0.68 | 0.427911 |
Target: 5'- uGCg-GGGCGACacgaagcuGGCCGcCGGUGCGUcgaUCg -3' miRNA: 3'- -CGgaCCCGCUG--------UCGGU-GUUACGCA---AG- -5' |
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27642 | 3' | -55.4 | NC_005882.1 | + | 24972 | 0.68 | 0.448019 |
Target: 5'- gGCaCUGGGuCGAC-GCCGCGGaGCGg-- -3' miRNA: 3'- -CG-GACCC-GCUGuCGGUGUUaCGCaag -5' |
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27642 | 3' | -55.4 | NC_005882.1 | + | 19572 | 0.67 | 0.47913 |
Target: 5'- -gCUGGGUGuuuuCGGCCucCAGUGCGg-- -3' miRNA: 3'- cgGACCCGCu---GUCGGu-GUUACGCaag -5' |
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27642 | 3' | -55.4 | NC_005882.1 | + | 26768 | 0.67 | 0.489735 |
Target: 5'- gGCC-GGGaugGGCGGCCGCGAacUGCGc-- -3' miRNA: 3'- -CGGaCCCg--CUGUCGGUGUU--ACGCaag -5' |
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27642 | 3' | -55.4 | NC_005882.1 | + | 25446 | 0.67 | 0.489735 |
Target: 5'- cGCCUGGGgGACgcgauggcgcgGGCCGuugcgcaucCGAUGCGc-- -3' miRNA: 3'- -CGGACCCgCUG-----------UCGGU---------GUUACGCaag -5' |
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27642 | 3' | -55.4 | NC_005882.1 | + | 12006 | 0.66 | 0.533176 |
Target: 5'- cGCCUcGGCGggcacuugcGCGGCCACGGgcgcgGCGg-- -3' miRNA: 3'- -CGGAcCCGC---------UGUCGGUGUUa----CGCaag -5' |
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27642 | 3' | -55.4 | NC_005882.1 | + | 25716 | 0.66 | 0.544258 |
Target: 5'- cGCCgauuacGGGCGcggccgugGCAGCCGCcGUcGCGUa- -3' miRNA: 3'- -CGGa-----CCCGC--------UGUCGGUGuUA-CGCAag -5' |
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27642 | 3' | -55.4 | NC_005882.1 | + | 25974 | 0.66 | 0.555413 |
Target: 5'- ---aGGGCGACgcGGCgCugAAggagGCGUUCa -3' miRNA: 3'- cggaCCCGCUG--UCG-GugUUa---CGCAAG- -5' |
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27642 | 3' | -55.4 | NC_005882.1 | + | 22954 | 0.66 | 0.577914 |
Target: 5'- cGCCgGGuGCGACGGCgGCcaagGCGa-- -3' miRNA: 3'- -CGGaCC-CGCUGUCGgUGuua-CGCaag -5' |
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27642 | 3' | -55.4 | NC_005882.1 | + | 23553 | 0.66 | 0.577914 |
Target: 5'- cGCCUGuGG-GGCAaCCGCAcgGCGg-- -3' miRNA: 3'- -CGGAC-CCgCUGUcGGUGUuaCGCaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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