miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27642 5' -60.2 NC_005882.1 + 25672 0.66 0.388274
Target:  5'- cCGaGCAU--GUCGgCGcCGAGCCCCUGGc -3'
miRNA:   3'- -GC-CGUGagUAGCaGC-GCUCGGGGGCU- -5'
27642 5' -60.2 NC_005882.1 + 1760 0.66 0.362199
Target:  5'- uCGGCguAUUCAgCGUgggcgCGCGGGCCgCCCGu -3'
miRNA:   3'- -GCCG--UGAGUaGCA-----GCGCUCGG-GGGCu -5'
27642 5' -60.2 NC_005882.1 + 13013 0.66 0.362199
Target:  5'- gGGCG-UCAUCGgCGCGGGCCggcgcaacagcUCCGGc -3'
miRNA:   3'- gCCGUgAGUAGCaGCGCUCGG-----------GGGCU- -5'
27642 5' -60.2 NC_005882.1 + 23244 0.66 0.353782
Target:  5'- uCGGCGCaUCGaUGUaCGCGAuCgCCCCGAg -3'
miRNA:   3'- -GCCGUG-AGUaGCA-GCGCUcG-GGGGCU- -5'
27642 5' -60.2 NC_005882.1 + 27869 0.67 0.337366
Target:  5'- gCGGCGCUCG-CGcuUCGCGAGCagguCgUCGAg -3'
miRNA:   3'- -GCCGUGAGUaGC--AGCGCUCG----GgGGCU- -5'
27642 5' -60.2 NC_005882.1 + 27014 0.68 0.291494
Target:  5'- gCGGCgcGCUCGUCGUuggcCGCGcgcuGCUCCCu- -3'
miRNA:   3'- -GCCG--UGAGUAGCA----GCGCu---CGGGGGcu -5'
27642 5' -60.2 NC_005882.1 + 8696 0.68 0.257113
Target:  5'- uCGGCGCUgcUCGUCGCcaacuGCCCgauCCGAu -3'
miRNA:   3'- -GCCGUGAguAGCAGCGcu---CGGG---GGCU- -5'
27642 5' -60.2 NC_005882.1 + 18737 0.69 0.244319
Target:  5'- gGGCGCUguggcUAUCGUUGCGcGCCUCgGGu -3'
miRNA:   3'- gCCGUGA-----GUAGCAGCGCuCGGGGgCU- -5'
27642 5' -60.2 NC_005882.1 + 2191 0.69 0.226123
Target:  5'- aGGCACUCGUCGaucaucgacuUCGCG-GCCUgCa- -3'
miRNA:   3'- gCCGUGAGUAGC----------AGCGCuCGGGgGcu -5'
27642 5' -60.2 NC_005882.1 + 3683 0.72 0.155836
Target:  5'- aGGUAUUCGUCcaggCGCGGGCCgUCGAg -3'
miRNA:   3'- gCCGUGAGUAGca--GCGCUCGGgGGCU- -5'
27642 5' -60.2 NC_005882.1 + 27559 0.74 0.111376
Target:  5'- gGGCGCUCGUCGgcggucgccgcgCGCGcGGCCgCCGGc -3'
miRNA:   3'- gCCGUGAGUAGCa-----------GCGC-UCGGgGGCU- -5'
27642 5' -60.2 NC_005882.1 + 6451 1.09 0.000218
Target:  5'- aCGGCACUCAUCGUCGCGAGCCCCCGAa -3'
miRNA:   3'- -GCCGUGAGUAGCAGCGCUCGGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.