miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27643 3' -50.7 NC_005882.1 + 29867 0.66 0.838024
Target:  5'- -cGAag-CUGGCCGCCggugcgUCGAucGAGCu -3'
miRNA:   3'- gaCUaaaGGCCGGCGGa-----AGUU--UUCGc -5'
27643 3' -50.7 NC_005882.1 + 28585 0.66 0.832333
Target:  5'- -gGAUg-CCGGCCGCCUcgggaaucuggucggUCAGGgacgccagcgcuGGCGa -3'
miRNA:   3'- gaCUAaaGGCCGGCGGA---------------AGUUU------------UCGC- -5'
27643 3' -50.7 NC_005882.1 + 8299 0.66 0.818723
Target:  5'- uCUGA--UCCGGCCGU--UCGAGGacGCGu -3'
miRNA:   3'- -GACUaaAGGCCGGCGgaAGUUUU--CGC- -5'
27643 3' -50.7 NC_005882.1 + 9720 0.66 0.818723
Target:  5'- gUGAauaUCCgGGCCGgCUcaaUCGGGAGCGu -3'
miRNA:   3'- gACUaa-AGG-CCGGCgGA---AGUUUUCGC- -5'
27643 3' -50.7 NC_005882.1 + 16878 0.67 0.808732
Target:  5'- -aGAUccaggCCGGCCGCgacCAAAAGCu -3'
miRNA:   3'- gaCUAaa---GGCCGGCGgaaGUUUUCGc -5'
27643 3' -50.7 NC_005882.1 + 22392 0.67 0.79853
Target:  5'- cCUGAag-CCGGCCGCagcgccgUCGAccAAGCc -3'
miRNA:   3'- -GACUaaaGGCCGGCGga-----AGUU--UUCGc -5'
27643 3' -50.7 NC_005882.1 + 10407 0.67 0.766788
Target:  5'- aCUGAcgagCCGGCCGgCgaUUCAGucGCGc -3'
miRNA:   3'- -GACUaaa-GGCCGGCgG--AAGUUuuCGC- -5'
27643 3' -50.7 NC_005882.1 + 23086 0.68 0.733629
Target:  5'- ----aUUCCGGCUGCgUUCAc-GGCGc -3'
miRNA:   3'- gacuaAAGGCCGGCGgAAGUuuUCGC- -5'
27643 3' -50.7 NC_005882.1 + 25761 0.69 0.687859
Target:  5'- -cGAUgUCgcgcaGGCCGgCUUCGAAGGUGg -3'
miRNA:   3'- gaCUAaAGg----CCGGCgGAAGUUUUCGC- -5'
27643 3' -50.7 NC_005882.1 + 3260 0.69 0.687859
Target:  5'- uCUGGaucgucggCCGGCCGCCgUCGcgcGGCGa -3'
miRNA:   3'- -GACUaaa-----GGCCGGCGGaAGUuu-UCGC- -5'
27643 3' -50.7 NC_005882.1 + 13649 0.69 0.687859
Target:  5'- -gGAaccgUCCGGCCGCUggu-GGGGCGa -3'
miRNA:   3'- gaCUaa--AGGCCGGCGGaaguUUUCGC- -5'
27643 3' -50.7 NC_005882.1 + 21349 0.69 0.687859
Target:  5'- aUGAcgucgCCGGCCGCCgucgccgCAucGAGCGc -3'
miRNA:   3'- gACUaaa--GGCCGGCGGaa-----GUu-UUCGC- -5'
27643 3' -50.7 NC_005882.1 + 35461 0.69 0.649324
Target:  5'- gCUGAUUgcccuucgaucggcUCCGGUagGCCUgcCAGAAGCGc -3'
miRNA:   3'- -GACUAA--------------AGGCCGg-CGGAa-GUUUUCGC- -5'
27643 3' -50.7 NC_005882.1 + 23862 0.7 0.629368
Target:  5'- -aGGUggCCGGCCGCCagcuccucuUUCGGGuuGCGg -3'
miRNA:   3'- gaCUAaaGGCCGGCGG---------AAGUUUu-CGC- -5'
27643 3' -50.7 NC_005882.1 + 15604 0.7 0.617629
Target:  5'- -cGAUcgugCCGucuucgaacGCCGCCUUCAcgGGCGg -3'
miRNA:   3'- gaCUAaa--GGC---------CGGCGGAAGUuuUCGC- -5'
27643 3' -50.7 NC_005882.1 + 31459 0.7 0.605904
Target:  5'- gCUGAUUgcagCCGGCaCGCgugUCGAgacGAGCGa -3'
miRNA:   3'- -GACUAAa---GGCCG-GCGga-AGUU---UUCGC- -5'
27643 3' -50.7 NC_005882.1 + 16081 0.71 0.559368
Target:  5'- -cGcUUUCaCGGCCGCCUUgCGGcGGCGc -3'
miRNA:   3'- gaCuAAAG-GCCGGCGGAA-GUUuUCGC- -5'
27643 3' -50.7 NC_005882.1 + 25918 0.72 0.491708
Target:  5'- -cGAUUUCUGGCCGgCUUCcuucGCGu -3'
miRNA:   3'- gaCUAAAGGCCGGCgGAAGuuuuCGC- -5'
27643 3' -50.7 NC_005882.1 + 21305 0.74 0.378939
Target:  5'- -cGAUgcgCCGGuuGCCUUCGGAauGGCu -3'
miRNA:   3'- gaCUAaa-GGCCggCGGAAGUUU--UCGc -5'
27643 3' -50.7 NC_005882.1 + 7011 1.1 0.001383
Target:  5'- uCUGAUUUCCGGCCGCCUUCAAAAGCGg -3'
miRNA:   3'- -GACUAAAGGCCGGCGGAAGUUUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.