miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27643 5' -48.1 NC_005882.1 + 24821 0.66 0.953033
Target:  5'- aGCCGCUUc-GAGucGGCgaGGucgaguUCGCCGAu -3'
miRNA:   3'- -CGGCGAAaaCUU--UUGaaCC------AGCGGCU- -5'
27643 5' -48.1 NC_005882.1 + 21210 0.66 0.953033
Target:  5'- cGCCGagcaggUUGAccggcGCUUGcUCGCCGAc -3'
miRNA:   3'- -CGGCgaa---AACUuu---UGAACcAGCGGCU- -5'
27643 5' -48.1 NC_005882.1 + 12708 0.66 0.953033
Target:  5'- cGCCGuCUgcguaUUGGcguucGAGCUUGGcgaccuucgcgUCGCCGGc -3'
miRNA:   3'- -CGGC-GAa----AACU-----UUUGAACC-----------AGCGGCU- -5'
27643 5' -48.1 NC_005882.1 + 4879 0.66 0.948227
Target:  5'- gGCCGCUguc-GAAGCUgccGG-CGUCGAc -3'
miRNA:   3'- -CGGCGAaaacUUUUGAa--CCaGCGGCU- -5'
27643 5' -48.1 NC_005882.1 + 15287 0.66 0.943106
Target:  5'- uGCCGCUgaucGAacaacaGAACcUGGuUCGCCGc -3'
miRNA:   3'- -CGGCGAaaa-CU------UUUGaACC-AGCGGCu -5'
27643 5' -48.1 NC_005882.1 + 22461 0.66 0.931904
Target:  5'- cGCCGC------GAACgcGGUCGCCGu -3'
miRNA:   3'- -CGGCGaaaacuUUUGaaCCAGCGGCu -5'
27643 5' -48.1 NC_005882.1 + 25589 0.67 0.912678
Target:  5'- cGCCGCgcugcgUGAGcaacgccaggGGCUcGG-CGCCGAc -3'
miRNA:   3'- -CGGCGaaa---ACUU----------UUGAaCCaGCGGCU- -5'
27643 5' -48.1 NC_005882.1 + 30066 0.67 0.905626
Target:  5'- cGCCGCcUUUGccGGCcUGGacggcgagCGCCGAg -3'
miRNA:   3'- -CGGCGaAAACuuUUGaACCa-------GCGGCU- -5'
27643 5' -48.1 NC_005882.1 + 9470 0.68 0.882582
Target:  5'- cGUCGCUUgaggUGAAAGCcgcugcgaUUGGcgCGCUGGc -3'
miRNA:   3'- -CGGCGAAa---ACUUUUG--------AACCa-GCGGCU- -5'
27643 5' -48.1 NC_005882.1 + 36548 0.68 0.882582
Target:  5'- cGCCGCgaucUGGGuag-UGGUCGCCc- -3'
miRNA:   3'- -CGGCGaaa-ACUUuugaACCAGCGGcu -5'
27643 5' -48.1 NC_005882.1 + 20351 0.68 0.87429
Target:  5'- cGCCGC----GAAAAaaUGGUCGCgGAc -3'
miRNA:   3'- -CGGCGaaaaCUUUUgaACCAGCGgCU- -5'
27643 5' -48.1 NC_005882.1 + 3624 0.69 0.856835
Target:  5'- cGCCGCUUgcGucGAUcacGUCGCCGAc -3'
miRNA:   3'- -CGGCGAAaaCuuUUGaacCAGCGGCU- -5'
27643 5' -48.1 NC_005882.1 + 6731 0.69 0.84769
Target:  5'- uGCCGCcUUcGAAAcCUUGGcgcagcaCGCCGAg -3'
miRNA:   3'- -CGGCGaAAaCUUUuGAACCa------GCGGCU- -5'
27643 5' -48.1 NC_005882.1 + 21753 0.69 0.828617
Target:  5'- cGUCGCcg--GGccGCUcgGGUCGCCGAu -3'
miRNA:   3'- -CGGCGaaaaCUuuUGAa-CCAGCGGCU- -5'
27643 5' -48.1 NC_005882.1 + 7076 0.73 0.614614
Target:  5'- cGCCGCUUUUGAAGGCg-----GCCGGa -3'
miRNA:   3'- -CGGCGAAAACUUUUGaaccagCGGCU- -5'
27643 5' -48.1 NC_005882.1 + 7045 1.13 0.00203
Target:  5'- cGCCGCUUUUGAAAACUUGGUCGCCGAc -3'
miRNA:   3'- -CGGCGAAAACUUUUGAACCAGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.