miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27644 5' -53.6 NC_005882.1 + 18500 0.66 0.726945
Target:  5'- ---aUUGAAGGUCACGAuuCCcGCCcgUCCg -3'
miRNA:   3'- caugAGCUUCCGGUGCU--GGuUGG--AGG- -5'
27644 5' -53.6 NC_005882.1 + 29359 0.66 0.715898
Target:  5'- uGUGCUCGuacgcuuuGGCCuuGCGGCUucgGACCgaugCCu -3'
miRNA:   3'- -CAUGAGCuu------CCGG--UGCUGG---UUGGa---GG- -5'
27644 5' -53.6 NC_005882.1 + 22375 0.66 0.715898
Target:  5'- cUGCUCGcgauGGGCUACcugaaGCCGGCCgcagcgCCg -3'
miRNA:   3'- cAUGAGCu---UCCGGUGc----UGGUUGGa-----GG- -5'
27644 5' -53.6 NC_005882.1 + 31545 0.66 0.715898
Target:  5'- aGUugUCGAucgacguGGCCGCGACguGCgaaaCCg -3'
miRNA:   3'- -CAugAGCUu------CCGGUGCUGguUGga--GG- -5'
27644 5' -53.6 NC_005882.1 + 20562 0.66 0.715898
Target:  5'- ---aUCGuguucGGCCgGCGGCCGAUCUUCg -3'
miRNA:   3'- caugAGCuu---CCGG-UGCUGGUUGGAGG- -5'
27644 5' -53.6 NC_005882.1 + 20589 0.66 0.715898
Target:  5'- aGUACUCGAugaaGGGCaucgUGACCGucgACCUgCu -3'
miRNA:   3'- -CAUGAGCU----UCCGgu--GCUGGU---UGGAgG- -5'
27644 5' -53.6 NC_005882.1 + 25887 0.66 0.704763
Target:  5'- cUGCUCGGGcgcguggcgacGGCCACGaacGCCGacaugaaagACCUCg -3'
miRNA:   3'- cAUGAGCUU-----------CCGGUGC---UGGU---------UGGAGg -5'
27644 5' -53.6 NC_005882.1 + 30491 0.66 0.704763
Target:  5'- cGUACUCGAGcaCCGCG-CCAuCCUUg -3'
miRNA:   3'- -CAUGAGCUUccGGUGCuGGUuGGAGg -5'
27644 5' -53.6 NC_005882.1 + 31967 0.66 0.693551
Target:  5'- -aGCgUCGgcGGCCGCuGACCGauuacgucgACgUCCg -3'
miRNA:   3'- caUG-AGCuuCCGGUG-CUGGU---------UGgAGG- -5'
27644 5' -53.6 NC_005882.1 + 30188 0.66 0.692426
Target:  5'- aGUGCgUCGAAgcccGGCUucgcgcgcguacgGCuGACCGACCUCg -3'
miRNA:   3'- -CAUG-AGCUU----CCGG-------------UG-CUGGUUGGAGg -5'
27644 5' -53.6 NC_005882.1 + 8394 0.66 0.682276
Target:  5'- cGUGC-CGAAGGCUauGCGGCUGAauacgUUUCCa -3'
miRNA:   3'- -CAUGaGCUUCCGG--UGCUGGUU-----GGAGG- -5'
27644 5' -53.6 NC_005882.1 + 25465 0.66 0.682276
Target:  5'- -aGCUCGucGGCgaCGCGGCCGagGCCaUUCa -3'
miRNA:   3'- caUGAGCuuCCG--GUGCUGGU--UGG-AGG- -5'
27644 5' -53.6 NC_005882.1 + 32405 0.66 0.682276
Target:  5'- uGUugUCGAGGcGCU-CGGCCAACUgggcgaaagCCu -3'
miRNA:   3'- -CAugAGCUUC-CGGuGCUGGUUGGa--------GG- -5'
27644 5' -53.6 NC_005882.1 + 22203 0.66 0.670949
Target:  5'- -aACUCGAucacguacuGCCACaGGCCGGCCgacucgCCg -3'
miRNA:   3'- caUGAGCUuc-------CGGUG-CUGGUUGGa-----GG- -5'
27644 5' -53.6 NC_005882.1 + 12209 0.66 0.670949
Target:  5'- -cGCUCGugcGG-UACGACCGgcACCUCUg -3'
miRNA:   3'- caUGAGCuu-CCgGUGCUGGU--UGGAGG- -5'
27644 5' -53.6 NC_005882.1 + 654 0.66 0.670949
Target:  5'- -aGCUCGAucAGuGCCugGG-CGACCUgCa -3'
miRNA:   3'- caUGAGCU--UC-CGGugCUgGUUGGAgG- -5'
27644 5' -53.6 NC_005882.1 + 21281 0.66 0.670949
Target:  5'- -gGCUUGGccGGCCGCGuCCGacucgACCUCg -3'
miRNA:   3'- caUGAGCUu-CCGGUGCuGGU-----UGGAGg -5'
27644 5' -53.6 NC_005882.1 + 23245 0.67 0.659582
Target:  5'- -gGC-CGgcGGgCACGAUCAACUUCa -3'
miRNA:   3'- caUGaGCuuCCgGUGCUGGUUGGAGg -5'
27644 5' -53.6 NC_005882.1 + 31253 0.67 0.659582
Target:  5'- --cCUCGuagucGGCCACGAUCucggccguaauGGCCUCUg -3'
miRNA:   3'- cauGAGCuu---CCGGUGCUGG-----------UUGGAGG- -5'
27644 5' -53.6 NC_005882.1 + 27669 0.67 0.659582
Target:  5'- cUGCagGGAcGCCGCGGCCGcgGCCUgCg -3'
miRNA:   3'- cAUGagCUUcCGGUGCUGGU--UGGAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.