miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27647 3' -64.6 NC_005882.1 + 10606 1.05 0.000124
Target:  5'- cAACACGCUGCCGCCGCCUCCGCCGCUg -3'
miRNA:   3'- -UUGUGCGACGGCGGCGGAGGCGGCGA- -5'
27647 3' -64.6 NC_005882.1 + 30075 0.79 0.017778
Target:  5'- -uCGCGgUGCCGCCGCCUuuGCCGg- -3'
miRNA:   3'- uuGUGCgACGGCGGCGGAggCGGCga -5'
27647 3' -64.6 NC_005882.1 + 16974 0.73 0.047612
Target:  5'- gGACGaGCgGCCGCUGCCggugUCCGCCGUUg -3'
miRNA:   3'- -UUGUgCGaCGGCGGCGG----AGGCGGCGA- -5'
27647 3' -64.6 NC_005882.1 + 27663 0.72 0.058179
Target:  5'- gGACGcCGCgGCCGCgGCCUgCGUCGCc -3'
miRNA:   3'- -UUGU-GCGaCGGCGgCGGAgGCGGCGa -5'
27647 3' -64.6 NC_005882.1 + 21350 0.72 0.063375
Target:  5'- gAugACGUcGCCgGCCGCCgUCGCCGCa -3'
miRNA:   3'- -UugUGCGaCGG-CGGCGGaGGCGGCGa -5'
27647 3' -64.6 NC_005882.1 + 28716 0.72 0.067084
Target:  5'- uAGCGCGCUGCuCGCCGUCgagagcuggcCCGCgGCc -3'
miRNA:   3'- -UUGUGCGACG-GCGGCGGa---------GGCGgCGa -5'
27647 3' -64.6 NC_005882.1 + 14262 0.71 0.081784
Target:  5'- cGGC-CGCgGCgGCCGCUUCCGCgCGUg -3'
miRNA:   3'- -UUGuGCGaCGgCGGCGGAGGCG-GCGa -5'
27647 3' -64.6 NC_005882.1 + 14197 0.71 0.081784
Target:  5'- aGGCACGCgcggaagcgGCCGCCGCggCCGUCGaCa -3'
miRNA:   3'- -UUGUGCGa--------CGGCGGCGgaGGCGGC-Ga -5'
27647 3' -64.6 NC_005882.1 + 26642 0.7 0.088986
Target:  5'- cGCGCGCUGCUGCCGucgcucacggaCCugaugaacacggUCaCGCCGCUg -3'
miRNA:   3'- uUGUGCGACGGCGGC-----------GG------------AG-GCGGCGA- -5'
27647 3' -64.6 NC_005882.1 + 33031 0.7 0.088986
Target:  5'- uAGCGCGUgcgGCCGCCGagcugCUUCGCCuGCUu -3'
miRNA:   3'- -UUGUGCGa--CGGCGGCg----GAGGCGG-CGA- -5'
27647 3' -64.6 NC_005882.1 + 27581 0.7 0.089991
Target:  5'- cGCGCGCgGCCGCCggcauggcgacgcagGCCgCgGCCGCg -3'
miRNA:   3'- uUGUGCGaCGGCGG---------------CGGaGgCGGCGa -5'
27647 3' -64.6 NC_005882.1 + 11811 0.69 0.105234
Target:  5'- gAGCugGUguucGCCGCgGCCaugcUUCGCCGCg -3'
miRNA:   3'- -UUGugCGa---CGGCGgCGG----AGGCGGCGa -5'
27647 3' -64.6 NC_005882.1 + 12593 0.68 0.120865
Target:  5'- --aGCGCcgGCCGCCGCCgcgacacacUgGCCGCg -3'
miRNA:   3'- uugUGCGa-CGGCGGCGGa--------GgCGGCGa -5'
27647 3' -64.6 NC_005882.1 + 21495 0.68 0.12424
Target:  5'- cGACGCGCacuugcGCgGCCGCUacaacCUGCCGCUg -3'
miRNA:   3'- -UUGUGCGa-----CGgCGGCGGa----GGCGGCGA- -5'
27647 3' -64.6 NC_005882.1 + 11919 0.68 0.131255
Target:  5'- -uCGCGUUGCucggCGCCGCCgcgCCcgugGCCGCg -3'
miRNA:   3'- uuGUGCGACG----GCGGCGGa--GG----CGGCGa -5'
27647 3' -64.6 NC_005882.1 + 25639 0.68 0.138633
Target:  5'- cAUACGCgacgGCgGCUGCCaCgGCCGCg -3'
miRNA:   3'- uUGUGCGa---CGgCGGCGGaGgCGGCGa -5'
27647 3' -64.6 NC_005882.1 + 21038 0.67 0.146389
Target:  5'- uAC-CGCUGCCGCCGgCCUgaaCCGCUu -3'
miRNA:   3'- uUGuGCGACGGCGGC-GGAggcGGCGA- -5'
27647 3' -64.6 NC_005882.1 + 12887 0.67 0.150414
Target:  5'- -cCGCGUguggaacGCCGCCGCCggCGCCGa- -3'
miRNA:   3'- uuGUGCGa------CGGCGGCGGagGCGGCga -5'
27647 3' -64.6 NC_005882.1 + 26110 0.67 0.15454
Target:  5'- gGACGCGCUGacgcagaucaUCGCCaGCCUCgaagucgGCCGCg -3'
miRNA:   3'- -UUGUGCGAC----------GGCGG-CGGAGg------CGGCGa -5'
27647 3' -64.6 NC_005882.1 + 21742 0.67 0.15454
Target:  5'- cGCGCGC-GCCGUCGCCagUUCGaCGCg -3'
miRNA:   3'- uUGUGCGaCGGCGGCGG--AGGCgGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.