miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27649 5' -61.3 NC_005882.1 + 22482 0.66 0.328576
Target:  5'- --uUCCGGCacgcuggggcgcgCGGGCUuGGuCGAcGGCGCu -3'
miRNA:   3'- gauAGGCCG-------------GCUCGAcCC-GCU-CCGCG- -5'
27649 5' -61.3 NC_005882.1 + 30623 0.66 0.321512
Target:  5'- ---gCCGGaUCGGGC--GGCGAuGGCGCu -3'
miRNA:   3'- gauaGGCC-GGCUCGacCCGCU-CCGCG- -5'
27649 5' -61.3 NC_005882.1 + 23231 0.66 0.291494
Target:  5'- ---gCUGGCCGGGCgcGGGCc-GGCGg -3'
miRNA:   3'- gauaGGCCGGCUCGa-CCCGcuCCGCg -5'
27649 5' -61.3 NC_005882.1 + 25105 0.67 0.28434
Target:  5'- --uUgCGGCCG-GCUcGGGCGccGGGcCGCc -3'
miRNA:   3'- gauAgGCCGGCuCGA-CCCGC--UCC-GCG- -5'
27649 5' -61.3 NC_005882.1 + 31190 0.67 0.277326
Target:  5'- ----aCGGCCGAGaucgUGGccgacuaCGAGGCGCg -3'
miRNA:   3'- gauagGCCGGCUCg---ACCc------GCUCCGCG- -5'
27649 5' -61.3 NC_005882.1 + 12468 0.67 0.277326
Target:  5'- -cGUCaaGGCCGGGUUcGGGCcGGGaGCGUg -3'
miRNA:   3'- gaUAGg-CCGGCUCGA-CCCG-CUC-CGCG- -5'
27649 5' -61.3 NC_005882.1 + 27150 0.67 0.250649
Target:  5'- cCUGaugCUGGCCGGGCgcgcGGUGcucuggcucGGGCGCg -3'
miRNA:   3'- -GAUa--GGCCGGCUCGac--CCGC---------UCCGCG- -5'
27649 5' -61.3 NC_005882.1 + 25572 0.68 0.244319
Target:  5'- uUGUCCGGCCGAGgcggucguaCUGgccgcgcagcucGGCGAuguuGCGCa -3'
miRNA:   3'- gAUAGGCCGGCUC---------GAC------------CCGCUc---CGCG- -5'
27649 5' -61.3 NC_005882.1 + 20870 0.68 0.220318
Target:  5'- --uUCCGGCCGuaccuGCUcGGCGcGGaCGCc -3'
miRNA:   3'- gauAGGCCGGCu----CGAcCCGCuCC-GCG- -5'
27649 5' -61.3 NC_005882.1 + 21807 0.68 0.214641
Target:  5'- -gGUCCGcGUCGAaCU-GGCGAcGGCGCg -3'
miRNA:   3'- gaUAGGC-CGGCUcGAcCCGCU-CCGCG- -5'
27649 5' -61.3 NC_005882.1 + 18171 0.69 0.18811
Target:  5'- ---gCCGGCCaucagaaGGCUGGcGCGAuGCGCa -3'
miRNA:   3'- gauaGGCCGGc------UCGACC-CGCUcCGCG- -5'
27649 5' -61.3 NC_005882.1 + 23728 0.69 0.183163
Target:  5'- -gGUUCGGgCGcaAGCUGaucGGCGAcGGCGCg -3'
miRNA:   3'- gaUAGGCCgGC--UCGAC---CCGCU-CCGCG- -5'
27649 5' -61.3 NC_005882.1 + 26771 0.7 0.173147
Target:  5'- ---aUCGGCCGGGaUGGGCGGccgcgaacugcgcGGUGCg -3'
miRNA:   3'- gauaGGCCGGCUCgACCCGCU-------------CCGCG- -5'
27649 5' -61.3 NC_005882.1 + 28030 0.7 0.151657
Target:  5'- -gAUCCGgaaGCCGAGCUGG-CGAagcuGCGCg -3'
miRNA:   3'- gaUAGGC---CGGCUCGACCcGCUc---CGCG- -5'
27649 5' -61.3 NC_005882.1 + 23144 0.7 0.151657
Target:  5'- -gGUCuCGGUCGAGCUGGagGCGAuGGcCGUc -3'
miRNA:   3'- gaUAG-GCCGGCUCGACC--CGCU-CC-GCG- -5'
27649 5' -61.3 NC_005882.1 + 945 0.72 0.121735
Target:  5'- -cAUCUGGCUuGAGCUGGcggauCGGGGCGUc -3'
miRNA:   3'- gaUAGGCCGG-CUCGACCc----GCUCCGCG- -5'
27649 5' -61.3 NC_005882.1 + 13654 0.73 0.102706
Target:  5'- -cGUCCGGCCGcuGGUgGGGCGAucucacgcgcuacGGCGUc -3'
miRNA:   3'- gaUAGGCCGGC--UCGaCCCGCU-------------CCGCG- -5'
27649 5' -61.3 NC_005882.1 + 17930 0.73 0.100148
Target:  5'- ---aCCGG-CGAGCUGcGCGAGGuCGCg -3'
miRNA:   3'- gauaGGCCgGCUCGACcCGCUCC-GCG- -5'
27649 5' -61.3 NC_005882.1 + 12546 0.75 0.073379
Target:  5'- ----gCGGCCGGcGCUGcGGCGAucGGCGCa -3'
miRNA:   3'- gauagGCCGGCU-CGAC-CCGCU--CCGCG- -5'
27649 5' -61.3 NC_005882.1 + 12152 1.11 0.000101
Target:  5'- cCUAUCCGGCCGAGCUGGGCGAGGCGCa -3'
miRNA:   3'- -GAUAGGCCGGCUCGACCCGCUCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.