miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2765 3' -49.9 NC_001491.2 + 115098 0.66 0.99698
Target:  5'- gGCUGcGuCGAGuACCUCUGccuGCGCcugggcuccGCCa -3'
miRNA:   3'- -CGAC-C-GUUUuUGGAGACuu-CGCG---------UGG- -5'
2765 3' -49.9 NC_001491.2 + 69801 0.66 0.99698
Target:  5'- gGCacugGGCGugucucuGGCCUUUGAGGUuaACCu -3'
miRNA:   3'- -CGa---CCGUuu-----UUGGAGACUUCGcgUGG- -5'
2765 3' -49.9 NC_001491.2 + 56890 0.66 0.996432
Target:  5'- cUUGGUuGGAGCCaUUGAugGGCGCAgCCu -3'
miRNA:   3'- cGACCGuUUUUGGaGACU--UCGCGU-GG- -5'
2765 3' -49.9 NC_001491.2 + 106307 0.66 0.996432
Target:  5'- --aGGCAcAGAUCUCUGucgucuAGGCGCAa- -3'
miRNA:   3'- cgaCCGUuUUUGGAGAC------UUCGCGUgg -5'
2765 3' -49.9 NC_001491.2 + 43644 0.66 0.996432
Target:  5'- cGCUGGagcuAAAAgCUUUGAuGC-CACCa -3'
miRNA:   3'- -CGACCgu--UUUUgGAGACUuCGcGUGG- -5'
2765 3' -49.9 NC_001491.2 + 144212 0.66 0.996432
Target:  5'- cGCUaGGuCGAAGcggGCCUC-GGAGC-CACCc -3'
miRNA:   3'- -CGA-CC-GUUUU---UGGAGaCUUCGcGUGG- -5'
2765 3' -49.9 NC_001491.2 + 1735 0.66 0.996432
Target:  5'- -aUGGCGguguacgacgGGGGCCUCgacgGAAGcCGCuCCg -3'
miRNA:   3'- cgACCGU----------UUUUGGAGa---CUUC-GCGuGG- -5'
2765 3' -49.9 NC_001491.2 + 60142 0.66 0.995599
Target:  5'- cCUGGCcucGAGGGCC-CUGAgaGccgcuuccgccgccGCGCGCCg -3'
miRNA:   3'- cGACCG---UUUUUGGaGACU--U--------------CGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 116628 0.66 0.995089
Target:  5'- uGCUGGCcugccAGGCCgUCUucGAGGCccuccuGCGCCu -3'
miRNA:   3'- -CGACCGuu---UUUGG-AGA--CUUCG------CGUGG- -5'
2765 3' -49.9 NC_001491.2 + 118898 0.66 0.995089
Target:  5'- aGCUcGGCGcgGAAGCCuggauaUCUGAcggGGCGUgguuACCa -3'
miRNA:   3'- -CGA-CCGU--UUUUGG------AGACU---UCGCG----UGG- -5'
2765 3' -49.9 NC_001491.2 + 82655 0.66 0.995089
Target:  5'- cGCUgGGCcuGGGCgUUUGggGUgagagccuGCACCg -3'
miRNA:   3'- -CGA-CCGuuUUUGgAGACuuCG--------CGUGG- -5'
2765 3' -49.9 NC_001491.2 + 60867 0.66 0.995089
Target:  5'- aCUGGCGAugGAACgCUUUGAcAGaCGCuCCg -3'
miRNA:   3'- cGACCGUU--UUUG-GAGACU-UC-GCGuGG- -5'
2765 3' -49.9 NC_001491.2 + 114865 0.66 0.994278
Target:  5'- cGCgagGGCcGAGGCCgcguucGCGCGCCu -3'
miRNA:   3'- -CGa--CCGuUUUUGGagacuuCGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 77815 0.66 0.994278
Target:  5'- uCUGGUaccggaauuuuGAAcGCCUCUGA-GCGCcgguCCa -3'
miRNA:   3'- cGACCG-----------UUUuUGGAGACUuCGCGu---GG- -5'
2765 3' -49.9 NC_001491.2 + 147271 0.66 0.994278
Target:  5'- gGgaGGCGGccGCCUgaggGGAGCGgGCCu -3'
miRNA:   3'- -CgaCCGUUuuUGGAga--CUUCGCgUGG- -5'
2765 3' -49.9 NC_001491.2 + 39564 0.66 0.994278
Target:  5'- ---aGCAAAAGgCUCUGAAG-GCGCg -3'
miRNA:   3'- cgacCGUUUUUgGAGACUUCgCGUGg -5'
2765 3' -49.9 NC_001491.2 + 45752 0.66 0.994191
Target:  5'- uGCUGGCAAc-ACCUCcgacgguUGGugcucGUGCAUCa -3'
miRNA:   3'- -CGACCGUUuuUGGAG-------ACUu----CGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 69589 0.67 0.993362
Target:  5'- uGCUGGCGAGAACgCUacccccggGAAGCGg--- -3'
miRNA:   3'- -CGACCGUUUUUG-GAga------CUUCGCgugg -5'
2765 3' -49.9 NC_001491.2 + 20326 0.67 0.993362
Target:  5'- gGUUGGguGGGGCC---GggGCGCGuCCg -3'
miRNA:   3'- -CGACCguUUUUGGagaCuuCGCGU-GG- -5'
2765 3' -49.9 NC_001491.2 + 149301 0.67 0.993362
Target:  5'- aGCgauaGGgGAAAGCCUg-GAAGUGC-CCa -3'
miRNA:   3'- -CGa---CCgUUUUUGGAgaCUUCGCGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.