miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2765 3' -49.9 NC_001491.2 + 48876 0.67 0.989895
Target:  5'- aGCUGGCcgccauggagcaAAAcGCCUCUGAuGC-UGCCu -3'
miRNA:   3'- -CGACCG------------UUUuUGGAGACUuCGcGUGG- -5'
2765 3' -49.9 NC_001491.2 + 13954 0.67 0.989895
Target:  5'- aGCUcGCcuuguAGCCgCUGGuauAGCGCGCCg -3'
miRNA:   3'- -CGAcCGuuu--UUGGaGACU---UCGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 66009 0.67 0.989895
Target:  5'- --aGGCAccu-CCauaCUGGAGCGUGCCa -3'
miRNA:   3'- cgaCCGUuuuuGGa--GACUUCGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 137677 0.67 0.989759
Target:  5'- aGCgGGCGcgGGAgcgcgcgagcgccGCCUC-GggGCGCGCa -3'
miRNA:   3'- -CGaCCGU--UUU-------------UGGAGaCuuCGCGUGg -5'
2765 3' -49.9 NC_001491.2 + 32435 0.67 0.988468
Target:  5'- cGCU-GCGGAAGCCguuaGGGCGCACg -3'
miRNA:   3'- -CGAcCGUUUUUGGagacUUCGCGUGg -5'
2765 3' -49.9 NC_001491.2 + 6859 0.67 0.988468
Target:  5'- gGUUGGCAcucgcaacuguaGGGcuuACCUgUGGAGCGUGCa -3'
miRNA:   3'- -CGACCGU------------UUU---UGGAgACUUCGCGUGg -5'
2765 3' -49.9 NC_001491.2 + 114936 0.67 0.99118
Target:  5'- cGCUGGCc----CCg--GGAGCGcCACCu -3'
miRNA:   3'- -CGACCGuuuuuGGagaCUUCGC-GUGG- -5'
2765 3' -49.9 NC_001491.2 + 115429 0.67 0.991657
Target:  5'- aGCUGGCGGccagcGGCCcgCUGAgacggagggccgccuGGaUGCACCa -3'
miRNA:   3'- -CGACCGUUu----UUGGa-GACU---------------UC-GCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 98609 0.67 0.993362
Target:  5'- -aUGGCAAAAccCCUCUGAuugacuucGUGCuCCa -3'
miRNA:   3'- cgACCGUUUUu-GGAGACUu-------CGCGuGG- -5'
2765 3' -49.9 NC_001491.2 + 69589 0.67 0.993362
Target:  5'- uGCUGGCGAGAACgCUacccccggGAAGCGg--- -3'
miRNA:   3'- -CGACCGUUUUUG-GAga------CUUCGCgugg -5'
2765 3' -49.9 NC_001491.2 + 20326 0.67 0.993362
Target:  5'- gGUUGGguGGGGCC---GggGCGCGuCCg -3'
miRNA:   3'- -CGACCguUUUUGGagaCuuCGCGU-GG- -5'
2765 3' -49.9 NC_001491.2 + 149301 0.67 0.993362
Target:  5'- aGCgauaGGgGAAAGCCUg-GAAGUGC-CCa -3'
miRNA:   3'- -CGa---CCgUUUUUGGAgaCUUCGCGuGG- -5'
2765 3' -49.9 NC_001491.2 + 142599 0.67 0.992333
Target:  5'- --gGGCAAAAAUUUUUGA-GCGCAa- -3'
miRNA:   3'- cgaCCGUUUUUGGAGACUuCGCGUgg -5'
2765 3' -49.9 NC_001491.2 + 106858 0.67 0.992333
Target:  5'- cGCUGGCuAAAuucACCaUUGc-GUGCACCa -3'
miRNA:   3'- -CGACCGuUUU---UGGaGACuuCGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 106231 0.67 0.992333
Target:  5'- aGCUGGCccucucggAGAGGCCuUCUGGAaCGCucgggGCCc -3'
miRNA:   3'- -CGACCG--------UUUUUGG-AGACUUcGCG-----UGG- -5'
2765 3' -49.9 NC_001491.2 + 22928 0.67 0.992112
Target:  5'- uGCcggGGCGAuauuaacuuauGCCUCUGGAGCuaGUGCUa -3'
miRNA:   3'- -CGa--CCGUUuu---------UGGAGACUUCG--CGUGG- -5'
2765 3' -49.9 NC_001491.2 + 110623 0.67 0.992
Target:  5'- cGC-GGCAAuguGCUUCUGAgaccgagacggcagAGUGUGCCc -3'
miRNA:   3'- -CGaCCGUUuu-UGGAGACU--------------UCGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 148477 0.68 0.984594
Target:  5'- cGCUGGCGGuacucCCUCgGAgccaggggaacgcgGGUGCGCUc -3'
miRNA:   3'- -CGACCGUUuuu--GGAGaCU--------------UCGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 80472 0.68 0.983238
Target:  5'- uGUUGGUGAcuACCUcCUGGAGUaGCAgCa -3'
miRNA:   3'- -CGACCGUUuuUGGA-GACUUCG-CGUgG- -5'
2765 3' -49.9 NC_001491.2 + 41308 0.68 0.980706
Target:  5'- cGCUGGCAucucgauccgcGGCCUUUGcGGCuucCACCa -3'
miRNA:   3'- -CGACCGUuu---------UUGGAGACuUCGc--GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.