Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2765 | 3' | -49.9 | NC_001491.2 | + | 145798 | 0.77 | 0.688441 |
Target: 5'- cGCUGGUAGAcGCC-C-GggGCGCACg -3' miRNA: 3'- -CGACCGUUUuUGGaGaCuuCGCGUGg -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 5679 | 0.76 | 0.724115 |
Target: 5'- gGCUGGgAAAAGCCg--GAgccggaaaacgugccGGCGCGCCa -3' miRNA: 3'- -CGACCgUUUUUGGagaCU---------------UCGCGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 88965 | 0.76 | 0.719962 |
Target: 5'- uGCUgGGCAggGAGACCguccaguauUUUGAAGCGCugCg -3' miRNA: 3'- -CGA-CCGU--UUUUGG---------AGACUUCGCGugG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 44386 | 0.75 | 0.780483 |
Target: 5'- cGCUGGCG---GCCUUUGAAGUGgAUUg -3' miRNA: 3'- -CGACCGUuuuUGGAGACUUCGCgUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 44511 | 0.75 | 0.780483 |
Target: 5'- cGCUGGCG---GCCUUUGAAGUGgAUUg -3' miRNA: 3'- -CGACCGUuuuUGGAGACUUCGCgUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 44574 | 0.75 | 0.780483 |
Target: 5'- cGCUGGCG---GCCUUUGAAGUGgAUUg -3' miRNA: 3'- -CGACCGUuuuUGGAGACUUCGCgUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 5112 | 0.75 | 0.750739 |
Target: 5'- uGCgaGGCGAAAACCUCcuaGAGGCGC-UCg -3' miRNA: 3'- -CGa-CCGUUUUUGGAGa--CUUCGCGuGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 117595 | 0.75 | 0.750739 |
Target: 5'- uCUGGCGGGAGCgUC-GAAGCGCAa- -3' miRNA: 3'- cGACCGUUUUUGgAGaCUUCGCGUgg -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 14184 | 0.74 | 0.835755 |
Target: 5'- --gGGCGGGAACCUCUGGgaAGgGCucgucGCCa -3' miRNA: 3'- cgaCCGUUUUUGGAGACU--UCgCG-----UGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 97669 | 0.74 | 0.799598 |
Target: 5'- cCUGGCGAGAGacgauCCUgUGGAGCuaGCCg -3' miRNA: 3'- cGACCGUUUUU-----GGAgACUUCGcgUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 148781 | 0.73 | 0.860769 |
Target: 5'- gGCUcGGCGgcggGGAGCCUCggUGAugGGCaGCACCa -3' miRNA: 3'- -CGA-CCGU----UUUUGGAG--ACU--UCG-CGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 70312 | 0.73 | 0.860769 |
Target: 5'- gGCgUGGUAAAGcGgCUCUGGuAGUGCGCCg -3' miRNA: 3'- -CG-ACCGUUUU-UgGAGACU-UCGCGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 79636 | 0.73 | 0.844308 |
Target: 5'- aGUUGGCG----UCUCUGAA-CGCACCa -3' miRNA: 3'- -CGACCGUuuuuGGAGACUUcGCGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 43167 | 0.71 | 0.933971 |
Target: 5'- uGCUGaCuAAAGGCCUCUGGcugcAGCGCuucCCa -3' miRNA: 3'- -CGACcG-UUUUUGGAGACU----UCGCGu--GG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 145976 | 0.71 | 0.922976 |
Target: 5'- --cGGCAcgAAGACCgguaCUGggGCcuGCGCCu -3' miRNA: 3'- cgaCCGU--UUUUGGa---GACuuCG--CGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 89066 | 0.71 | 0.931856 |
Target: 5'- cGCUGGUAGGcuucuuccaauugcAGCCUCUGgcGCcuagaccGUGCCg -3' miRNA: 3'- -CGACCGUUU--------------UUGGAGACuuCG-------CGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 18301 | 0.71 | 0.939075 |
Target: 5'- gGUUGGCAGcaggcACCccUUGAcAGCGCGCCg -3' miRNA: 3'- -CGACCGUUuu---UGGa-GACU-UCGCGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 60601 | 0.7 | 0.96074 |
Target: 5'- uGCUGGUGucuggguccguGAGCCUCUGcagGAGCgGCGCa -3' miRNA: 3'- -CGACCGUu----------UUUGGAGAC---UUCG-CGUGg -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 8635 | 0.7 | 0.95691 |
Target: 5'- cGCUGGCAuggcgcGACCUCcagcuaacGCGCACg -3' miRNA: 3'- -CGACCGUuu----UUGGAGacuu----CGCGUGg -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 147781 | 0.7 | 0.96074 |
Target: 5'- cGCUGGCcgccAgCUCcccGAAGCGCGCg -3' miRNA: 3'- -CGACCGuuuuUgGAGa--CUUCGCGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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