Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2765 | 3' | -49.9 | NC_001491.2 | + | 148395 | 0.7 | 0.96074 |
Target: 5'- aGC-GGCAc-AGCCUCaGggGCGCAgaguCCg -3' miRNA: 3'- -CGaCCGUuuUUGGAGaCuuCGCGU----GG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 60601 | 0.7 | 0.96074 |
Target: 5'- uGCUGGUGucuggguccguGAGCCUCUGcagGAGCgGCGCa -3' miRNA: 3'- -CGACCGUu----------UUUGGAGAC---UUCG-CGUGg -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 147781 | 0.7 | 0.96074 |
Target: 5'- cGCUGGCcgccAgCUCcccGAAGCGCGCg -3' miRNA: 3'- -CGACCGuuuuUgGAGa--CUUCGCGUGg -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 147304 | 0.69 | 0.964328 |
Target: 5'- aGCcgGGCAuc-GCCUCcuggcUGAGGUGgGCCg -3' miRNA: 3'- -CGa-CCGUuuuUGGAG-----ACUUCGCgUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 4742 | 0.69 | 0.964328 |
Target: 5'- uCUGGCGGGAAcCCUCgaggcgauaGAcGCGCACa -3' miRNA: 3'- cGACCGUUUUU-GGAGa--------CUuCGCGUGg -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 115235 | 0.69 | 0.964328 |
Target: 5'- uGCUGGCG---GCC-CUGggGaacCGCAUCc -3' miRNA: 3'- -CGACCGUuuuUGGaGACuuC---GCGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 86189 | 0.69 | 0.965697 |
Target: 5'- -aUGGCGAGuGCCacggcuucuagcagcUCgGggGCGCGCUg -3' miRNA: 3'- cgACCGUUUuUGG---------------AGaCuuCGCGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 127198 | 0.69 | 0.967356 |
Target: 5'- uCUGGCcAAAACUUCcGggGCGUuggucucgacgguACCa -3' miRNA: 3'- cGACCGuUUUUGGAGaCuuCGCG-------------UGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 145535 | 0.69 | 0.970803 |
Target: 5'- cGCgGGCGGuucGGGCCUCUccAGCGUcuugGCCa -3' miRNA: 3'- -CGaCCGUU---UUUGGAGAcuUCGCG----UGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 144692 | 0.69 | 0.970803 |
Target: 5'- gGCUGGguGAAccCCUCUucGGcCGCGCUg -3' miRNA: 3'- -CGACCguUUUu-GGAGAcuUC-GCGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 7987 | 0.69 | 0.973703 |
Target: 5'- uCUGGCGcGAauuauacagcagGCUguuguUCUGGAGCGCACg -3' miRNA: 3'- cGACCGUuUU------------UGG-----AGACUUCGCGUGg -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 14423 | 0.69 | 0.976388 |
Target: 5'- cCUGGcCAAGuuagcGGCCUCgcgguaguaccUGucGCGCACCa -3' miRNA: 3'- cGACC-GUUU-----UUGGAG-----------ACuuCGCGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 137093 | 0.69 | 0.976388 |
Target: 5'- -aUGGgGGAGacgggcACC-CUGAGGCaGCACCg -3' miRNA: 3'- cgACCgUUUU------UGGaGACUUCG-CGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 141371 | 0.69 | 0.976388 |
Target: 5'- uGCUGGCAGuc-CCUCcUGcAGCuGCugCc -3' miRNA: 3'- -CGACCGUUuuuGGAG-ACuUCG-CGugG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 82892 | 0.68 | 0.978867 |
Target: 5'- aGCUGGCc--AACCUCacggGuGGCGCuucCCa -3' miRNA: 3'- -CGACCGuuuUUGGAGa---CuUCGCGu--GG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 41308 | 0.68 | 0.980706 |
Target: 5'- cGCUGGCAucucgauccgcGGCCUUUGcGGCuucCACCa -3' miRNA: 3'- -CGACCGUuu---------UUGGAGACuUCGc--GUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 80472 | 0.68 | 0.983238 |
Target: 5'- uGUUGGUGAcuACCUcCUGGAGUaGCAgCa -3' miRNA: 3'- -CGACCGUUuuUGGA-GACUUCG-CGUgG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 148477 | 0.68 | 0.984594 |
Target: 5'- cGCUGGCGGuacucCCUCgGAgccaggggaacgcgGGUGCGCUc -3' miRNA: 3'- -CGACCGUUuuu--GGAGaCU--------------UCGCGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 140121 | 0.68 | 0.986889 |
Target: 5'- --cGGCGGAGGCagcggacgcgCUCcGGAGCgGCGCCg -3' miRNA: 3'- cgaCCGUUUUUG----------GAGaCUUCG-CGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 6859 | 0.67 | 0.988468 |
Target: 5'- gGUUGGCAcucgcaacuguaGGGcuuACCUgUGGAGCGUGCa -3' miRNA: 3'- -CGACCGU------------UUU---UGGAgACUUCGCGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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