Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2765 | 3' | -49.9 | NC_001491.2 | + | 98609 | 0.67 | 0.993362 |
Target: 5'- -aUGGCAAAAccCCUCUGAuugacuucGUGCuCCa -3' miRNA: 3'- cgACCGUUUUu-GGAGACUu-------CGCGuGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 142599 | 0.67 | 0.992333 |
Target: 5'- --gGGCAAAAAUUUUUGA-GCGCAa- -3' miRNA: 3'- cgaCCGUUUUUGGAGACUuCGCGUgg -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 106858 | 0.67 | 0.992333 |
Target: 5'- cGCUGGCuAAAuucACCaUUGc-GUGCACCa -3' miRNA: 3'- -CGACCGuUUU---UGGaGACuuCGCGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 106231 | 0.67 | 0.992333 |
Target: 5'- aGCUGGCccucucggAGAGGCCuUCUGGAaCGCucgggGCCc -3' miRNA: 3'- -CGACCG--------UUUUUGG-AGACUUcGCG-----UGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 22928 | 0.67 | 0.992112 |
Target: 5'- uGCcggGGCGAuauuaacuuauGCCUCUGGAGCuaGUGCUa -3' miRNA: 3'- -CGa--CCGUUuu---------UGGAGACUUCG--CGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 110623 | 0.67 | 0.992 |
Target: 5'- cGC-GGCAAuguGCUUCUGAgaccgagacggcagAGUGUGCCc -3' miRNA: 3'- -CGaCCGUUuu-UGGAGACU--------------UCGCGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 115429 | 0.67 | 0.991657 |
Target: 5'- aGCUGGCGGccagcGGCCcgCUGAgacggagggccgccuGGaUGCACCa -3' miRNA: 3'- -CGACCGUUu----UUGGa-GACU---------------UC-GCGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 114936 | 0.67 | 0.99118 |
Target: 5'- cGCUGGCc----CCg--GGAGCGcCACCu -3' miRNA: 3'- -CGACCGuuuuuGGagaCUUCGC-GUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 145428 | 0.67 | 0.99118 |
Target: 5'- gGCUGggaGCGGGcGCCgaagCUGGAGCcggagcggguGCGCCg -3' miRNA: 3'- -CGAC---CGUUUuUGGa---GACUUCG----------CGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 66009 | 0.67 | 0.989895 |
Target: 5'- --aGGCAccu-CCauaCUGGAGCGUGCCa -3' miRNA: 3'- cgaCCGUuuuuGGa--GACUUCGCGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 13954 | 0.67 | 0.989895 |
Target: 5'- aGCUcGCcuuguAGCCgCUGGuauAGCGCGCCg -3' miRNA: 3'- -CGAcCGuuu--UUGGaGACU---UCGCGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 48876 | 0.67 | 0.989895 |
Target: 5'- aGCUGGCcgccauggagcaAAAcGCCUCUGAuGC-UGCCu -3' miRNA: 3'- -CGACCG------------UUUuUGGAGACUuCGcGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 79048 | 0.67 | 0.989895 |
Target: 5'- gGUUGGCGuAAAGCUUCcUGcguGGCGCgaauACCg -3' miRNA: 3'- -CGACCGU-UUUUGGAG-ACu--UCGCG----UGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 8738 | 0.67 | 0.989895 |
Target: 5'- cGCUGG--GAAACCacaacgcaaaaUCUGgcGCGC-CCg -3' miRNA: 3'- -CGACCguUUUUGG-----------AGACuuCGCGuGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 137677 | 0.67 | 0.989759 |
Target: 5'- aGCgGGCGcgGGAgcgcgcgagcgccGCCUC-GggGCGCGCa -3' miRNA: 3'- -CGaCCGU--UUU-------------UGGAGaCuuCGCGUGg -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 32435 | 0.67 | 0.988468 |
Target: 5'- cGCU-GCGGAAGCCguuaGGGCGCACg -3' miRNA: 3'- -CGAcCGUUUUUGGagacUUCGCGUGg -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 6859 | 0.67 | 0.988468 |
Target: 5'- gGUUGGCAcucgcaacuguaGGGcuuACCUgUGGAGCGUGCa -3' miRNA: 3'- -CGACCGU------------UUU---UGGAgACUUCGCGUGg -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 140121 | 0.68 | 0.986889 |
Target: 5'- --cGGCGGAGGCagcggacgcgCUCcGGAGCgGCGCCg -3' miRNA: 3'- cgaCCGUUUUUG----------GAGaCUUCG-CGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 148477 | 0.68 | 0.984594 |
Target: 5'- cGCUGGCGGuacucCCUCgGAgccaggggaacgcgGGUGCGCUc -3' miRNA: 3'- -CGACCGUUuuu--GGAGaCU--------------UCGCGUGG- -5' |
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2765 | 3' | -49.9 | NC_001491.2 | + | 80472 | 0.68 | 0.983238 |
Target: 5'- uGUUGGUGAcuACCUcCUGGAGUaGCAgCa -3' miRNA: 3'- -CGACCGUUuuUGGA-GACUUCG-CGUgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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