miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2765 3' -49.9 NC_001491.2 + 41308 0.68 0.980706
Target:  5'- cGCUGGCAucucgauccgcGGCCUUUGcGGCuucCACCa -3'
miRNA:   3'- -CGACCGUuu---------UUGGAGACuUCGc--GUGG- -5'
2765 3' -49.9 NC_001491.2 + 82892 0.68 0.978867
Target:  5'- aGCUGGCc--AACCUCacggGuGGCGCuucCCa -3'
miRNA:   3'- -CGACCGuuuUUGGAGa---CuUCGCGu--GG- -5'
2765 3' -49.9 NC_001491.2 + 14423 0.69 0.976388
Target:  5'- cCUGGcCAAGuuagcGGCCUCgcgguaguaccUGucGCGCACCa -3'
miRNA:   3'- cGACC-GUUU-----UUGGAG-----------ACuuCGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 137093 0.69 0.976388
Target:  5'- -aUGGgGGAGacgggcACC-CUGAGGCaGCACCg -3'
miRNA:   3'- cgACCgUUUU------UGGaGACUUCG-CGUGG- -5'
2765 3' -49.9 NC_001491.2 + 141371 0.69 0.976388
Target:  5'- uGCUGGCAGuc-CCUCcUGcAGCuGCugCc -3'
miRNA:   3'- -CGACCGUUuuuGGAG-ACuUCG-CGugG- -5'
2765 3' -49.9 NC_001491.2 + 7987 0.69 0.973703
Target:  5'- uCUGGCGcGAauuauacagcagGCUguuguUCUGGAGCGCACg -3'
miRNA:   3'- cGACCGUuUU------------UGG-----AGACUUCGCGUGg -5'
2765 3' -49.9 NC_001491.2 + 144692 0.69 0.970803
Target:  5'- gGCUGGguGAAccCCUCUucGGcCGCGCUg -3'
miRNA:   3'- -CGACCguUUUu-GGAGAcuUC-GCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 145535 0.69 0.970803
Target:  5'- cGCgGGCGGuucGGGCCUCUccAGCGUcuugGCCa -3'
miRNA:   3'- -CGaCCGUU---UUUGGAGAcuUCGCG----UGG- -5'
2765 3' -49.9 NC_001491.2 + 127198 0.69 0.967356
Target:  5'- uCUGGCcAAAACUUCcGggGCGUuggucucgacgguACCa -3'
miRNA:   3'- cGACCGuUUUUGGAGaCuuCGCG-------------UGG- -5'
2765 3' -49.9 NC_001491.2 + 86189 0.69 0.965697
Target:  5'- -aUGGCGAGuGCCacggcuucuagcagcUCgGggGCGCGCUg -3'
miRNA:   3'- cgACCGUUUuUGG---------------AGaCuuCGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 4742 0.69 0.964328
Target:  5'- uCUGGCGGGAAcCCUCgaggcgauaGAcGCGCACa -3'
miRNA:   3'- cGACCGUUUUU-GGAGa--------CUuCGCGUGg -5'
2765 3' -49.9 NC_001491.2 + 115235 0.69 0.964328
Target:  5'- uGCUGGCG---GCC-CUGggGaacCGCAUCc -3'
miRNA:   3'- -CGACCGUuuuUGGaGACuuC---GCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 147304 0.69 0.964328
Target:  5'- aGCcgGGCAuc-GCCUCcuggcUGAGGUGgGCCg -3'
miRNA:   3'- -CGa-CCGUuuuUGGAG-----ACUUCGCgUGG- -5'
2765 3' -49.9 NC_001491.2 + 148395 0.7 0.96074
Target:  5'- aGC-GGCAc-AGCCUCaGggGCGCAgaguCCg -3'
miRNA:   3'- -CGaCCGUuuUUGGAGaCuuCGCGU----GG- -5'
2765 3' -49.9 NC_001491.2 + 60601 0.7 0.96074
Target:  5'- uGCUGGUGucuggguccguGAGCCUCUGcagGAGCgGCGCa -3'
miRNA:   3'- -CGACCGUu----------UUUGGAGAC---UUCG-CGUGg -5'
2765 3' -49.9 NC_001491.2 + 147781 0.7 0.96074
Target:  5'- cGCUGGCcgccAgCUCcccGAAGCGCGCg -3'
miRNA:   3'- -CGACCGuuuuUgGAGa--CUUCGCGUGg -5'
2765 3' -49.9 NC_001491.2 + 8635 0.7 0.95691
Target:  5'- cGCUGGCAuggcgcGACCUCcagcuaacGCGCACg -3'
miRNA:   3'- -CGACCGUuu----UUGGAGacuu----CGCGUGg -5'
2765 3' -49.9 NC_001491.2 + 148308 0.7 0.952833
Target:  5'- uGCUGGagguGAGGACCgcgcggCUGAGGUgGCGCUc -3'
miRNA:   3'- -CGACCg---UUUUUGGa-----GACUUCG-CGUGG- -5'
2765 3' -49.9 NC_001491.2 + 13920 0.7 0.948504
Target:  5'- gGCUGGCG---GCCUUgggcgGuGGCaGCGCCa -3'
miRNA:   3'- -CGACCGUuuuUGGAGa----CuUCG-CGUGG- -5'
2765 3' -49.9 NC_001491.2 + 18301 0.71 0.939075
Target:  5'- gGUUGGCAGcaggcACCccUUGAcAGCGCGCCg -3'
miRNA:   3'- -CGACCGUUuu---UGGa-GACU-UCGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.