miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2765 3' -49.9 NC_001491.2 + 1735 0.66 0.996432
Target:  5'- -aUGGCGguguacgacgGGGGCCUCgacgGAAGcCGCuCCg -3'
miRNA:   3'- cgACCGU----------UUUUGGAGa---CUUC-GCGuGG- -5'
2765 3' -49.9 NC_001491.2 + 4742 0.69 0.964328
Target:  5'- uCUGGCGGGAAcCCUCgaggcgauaGAcGCGCACa -3'
miRNA:   3'- cGACCGUUUUU-GGAGa--------CUuCGCGUGg -5'
2765 3' -49.9 NC_001491.2 + 5112 0.75 0.750739
Target:  5'- uGCgaGGCGAAAACCUCcuaGAGGCGC-UCg -3'
miRNA:   3'- -CGa-CCGUUUUUGGAGa--CUUCGCGuGG- -5'
2765 3' -49.9 NC_001491.2 + 5679 0.76 0.724115
Target:  5'- gGCUGGgAAAAGCCg--GAgccggaaaacgugccGGCGCGCCa -3'
miRNA:   3'- -CGACCgUUUUUGGagaCU---------------UCGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 6859 0.67 0.988468
Target:  5'- gGUUGGCAcucgcaacuguaGGGcuuACCUgUGGAGCGUGCa -3'
miRNA:   3'- -CGACCGU------------UUU---UGGAgACUUCGCGUGg -5'
2765 3' -49.9 NC_001491.2 + 7987 0.69 0.973703
Target:  5'- uCUGGCGcGAauuauacagcagGCUguuguUCUGGAGCGCACg -3'
miRNA:   3'- cGACCGUuUU------------UGG-----AGACUUCGCGUGg -5'
2765 3' -49.9 NC_001491.2 + 8635 0.7 0.95691
Target:  5'- cGCUGGCAuggcgcGACCUCcagcuaacGCGCACg -3'
miRNA:   3'- -CGACCGUuu----UUGGAGacuu----CGCGUGg -5'
2765 3' -49.9 NC_001491.2 + 8738 0.67 0.989895
Target:  5'- cGCUGG--GAAACCacaacgcaaaaUCUGgcGCGC-CCg -3'
miRNA:   3'- -CGACCguUUUUGG-----------AGACuuCGCGuGG- -5'
2765 3' -49.9 NC_001491.2 + 13920 0.7 0.948504
Target:  5'- gGCUGGCG---GCCUUgggcgGuGGCaGCGCCa -3'
miRNA:   3'- -CGACCGUuuuUGGAGa----CuUCG-CGUGG- -5'
2765 3' -49.9 NC_001491.2 + 13954 0.67 0.989895
Target:  5'- aGCUcGCcuuguAGCCgCUGGuauAGCGCGCCg -3'
miRNA:   3'- -CGAcCGuuu--UUGGaGACU---UCGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 14184 0.74 0.835755
Target:  5'- --gGGCGGGAACCUCUGGgaAGgGCucgucGCCa -3'
miRNA:   3'- cgaCCGUUUUUGGAGACU--UCgCG-----UGG- -5'
2765 3' -49.9 NC_001491.2 + 14423 0.69 0.976388
Target:  5'- cCUGGcCAAGuuagcGGCCUCgcgguaguaccUGucGCGCACCa -3'
miRNA:   3'- cGACC-GUUU-----UUGGAG-----------ACuuCGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 18301 0.71 0.939075
Target:  5'- gGUUGGCAGcaggcACCccUUGAcAGCGCGCCg -3'
miRNA:   3'- -CGACCGUUuu---UGGa-GACU-UCGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 20326 0.67 0.993362
Target:  5'- gGUUGGguGGGGCC---GggGCGCGuCCg -3'
miRNA:   3'- -CGACCguUUUUGGagaCuuCGCGU-GG- -5'
2765 3' -49.9 NC_001491.2 + 22928 0.67 0.992112
Target:  5'- uGCcggGGCGAuauuaacuuauGCCUCUGGAGCuaGUGCUa -3'
miRNA:   3'- -CGa--CCGUUuu---------UGGAGACUUCG--CGUGG- -5'
2765 3' -49.9 NC_001491.2 + 32435 0.67 0.988468
Target:  5'- cGCU-GCGGAAGCCguuaGGGCGCACg -3'
miRNA:   3'- -CGAcCGUUUUUGGagacUUCGCGUGg -5'
2765 3' -49.9 NC_001491.2 + 39564 0.66 0.994278
Target:  5'- ---aGCAAAAGgCUCUGAAG-GCGCg -3'
miRNA:   3'- cgacCGUUUUUgGAGACUUCgCGUGg -5'
2765 3' -49.9 NC_001491.2 + 41308 0.68 0.980706
Target:  5'- cGCUGGCAucucgauccgcGGCCUUUGcGGCuucCACCa -3'
miRNA:   3'- -CGACCGUuu---------UUGGAGACuUCGc--GUGG- -5'
2765 3' -49.9 NC_001491.2 + 43167 0.71 0.933971
Target:  5'- uGCUGaCuAAAGGCCUCUGGcugcAGCGCuucCCa -3'
miRNA:   3'- -CGACcG-UUUUUGGAGACU----UCGCGu--GG- -5'
2765 3' -49.9 NC_001491.2 + 43644 0.66 0.996432
Target:  5'- cGCUGGagcuAAAAgCUUUGAuGC-CACCa -3'
miRNA:   3'- -CGACCgu--UUUUgGAGACUuCGcGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.