miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2765 3' -49.9 NC_001491.2 + 44386 0.75 0.780483
Target:  5'- cGCUGGCG---GCCUUUGAAGUGgAUUg -3'
miRNA:   3'- -CGACCGUuuuUGGAGACUUCGCgUGG- -5'
2765 3' -49.9 NC_001491.2 + 44511 0.75 0.780483
Target:  5'- cGCUGGCG---GCCUUUGAAGUGgAUUg -3'
miRNA:   3'- -CGACCGUuuuUGGAGACUUCGCgUGG- -5'
2765 3' -49.9 NC_001491.2 + 44574 0.75 0.780483
Target:  5'- cGCUGGCG---GCCUUUGAAGUGgAUUg -3'
miRNA:   3'- -CGACCGUuuuUGGAGACUUCGCgUGG- -5'
2765 3' -49.9 NC_001491.2 + 45752 0.66 0.994191
Target:  5'- uGCUGGCAAc-ACCUCcgacgguUGGugcucGUGCAUCa -3'
miRNA:   3'- -CGACCGUUuuUGGAG-------ACUu----CGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 48876 0.67 0.989895
Target:  5'- aGCUGGCcgccauggagcaAAAcGCCUCUGAuGC-UGCCu -3'
miRNA:   3'- -CGACCG------------UUUuUGGAGACUuCGcGUGG- -5'
2765 3' -49.9 NC_001491.2 + 56890 0.66 0.996432
Target:  5'- cUUGGUuGGAGCCaUUGAugGGCGCAgCCu -3'
miRNA:   3'- cGACCGuUUUUGGaGACU--UCGCGU-GG- -5'
2765 3' -49.9 NC_001491.2 + 60142 0.66 0.995599
Target:  5'- cCUGGCcucGAGGGCC-CUGAgaGccgcuuccgccgccGCGCGCCg -3'
miRNA:   3'- cGACCG---UUUUUGGaGACU--U--------------CGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 60601 0.7 0.96074
Target:  5'- uGCUGGUGucuggguccguGAGCCUCUGcagGAGCgGCGCa -3'
miRNA:   3'- -CGACCGUu----------UUUGGAGAC---UUCG-CGUGg -5'
2765 3' -49.9 NC_001491.2 + 60867 0.66 0.995089
Target:  5'- aCUGGCGAugGAACgCUUUGAcAGaCGCuCCg -3'
miRNA:   3'- cGACCGUU--UUUG-GAGACU-UC-GCGuGG- -5'
2765 3' -49.9 NC_001491.2 + 66009 0.67 0.989895
Target:  5'- --aGGCAccu-CCauaCUGGAGCGUGCCa -3'
miRNA:   3'- cgaCCGUuuuuGGa--GACUUCGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 69589 0.67 0.993362
Target:  5'- uGCUGGCGAGAACgCUacccccggGAAGCGg--- -3'
miRNA:   3'- -CGACCGUUUUUG-GAga------CUUCGCgugg -5'
2765 3' -49.9 NC_001491.2 + 69801 0.66 0.99698
Target:  5'- gGCacugGGCGugucucuGGCCUUUGAGGUuaACCu -3'
miRNA:   3'- -CGa---CCGUuu-----UUGGAGACUUCGcgUGG- -5'
2765 3' -49.9 NC_001491.2 + 70312 0.73 0.860769
Target:  5'- gGCgUGGUAAAGcGgCUCUGGuAGUGCGCCg -3'
miRNA:   3'- -CG-ACCGUUUU-UgGAGACU-UCGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 77815 0.66 0.994278
Target:  5'- uCUGGUaccggaauuuuGAAcGCCUCUGA-GCGCcgguCCa -3'
miRNA:   3'- cGACCG-----------UUUuUGGAGACUuCGCGu---GG- -5'
2765 3' -49.9 NC_001491.2 + 79048 0.67 0.989895
Target:  5'- gGUUGGCGuAAAGCUUCcUGcguGGCGCgaauACCg -3'
miRNA:   3'- -CGACCGU-UUUUGGAG-ACu--UCGCG----UGG- -5'
2765 3' -49.9 NC_001491.2 + 79636 0.73 0.844308
Target:  5'- aGUUGGCG----UCUCUGAA-CGCACCa -3'
miRNA:   3'- -CGACCGUuuuuGGAGACUUcGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 80472 0.68 0.983238
Target:  5'- uGUUGGUGAcuACCUcCUGGAGUaGCAgCa -3'
miRNA:   3'- -CGACCGUUuuUGGA-GACUUCG-CGUgG- -5'
2765 3' -49.9 NC_001491.2 + 82655 0.66 0.995089
Target:  5'- cGCUgGGCcuGGGCgUUUGggGUgagagccuGCACCg -3'
miRNA:   3'- -CGA-CCGuuUUUGgAGACuuCG--------CGUGG- -5'
2765 3' -49.9 NC_001491.2 + 82892 0.68 0.978867
Target:  5'- aGCUGGCc--AACCUCacggGuGGCGCuucCCa -3'
miRNA:   3'- -CGACCGuuuUUGGAGa---CuUCGCGu--GG- -5'
2765 3' -49.9 NC_001491.2 + 86189 0.69 0.965697
Target:  5'- -aUGGCGAGuGCCacggcuucuagcagcUCgGggGCGCGCUg -3'
miRNA:   3'- cgACCGUUUuUGG---------------AGaCuuCGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.