miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2765 3' -49.9 NC_001491.2 + 149301 0.67 0.993362
Target:  5'- aGCgauaGGgGAAAGCCUg-GAAGUGC-CCa -3'
miRNA:   3'- -CGa---CCgUUUUUGGAgaCUUCGCGuGG- -5'
2765 3' -49.9 NC_001491.2 + 148781 0.73 0.860769
Target:  5'- gGCUcGGCGgcggGGAGCCUCggUGAugGGCaGCACCa -3'
miRNA:   3'- -CGA-CCGU----UUUUGGAG--ACU--UCG-CGUGG- -5'
2765 3' -49.9 NC_001491.2 + 148477 0.68 0.984594
Target:  5'- cGCUGGCGGuacucCCUCgGAgccaggggaacgcgGGUGCGCUc -3'
miRNA:   3'- -CGACCGUUuuu--GGAGaCU--------------UCGCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 148395 0.7 0.96074
Target:  5'- aGC-GGCAc-AGCCUCaGggGCGCAgaguCCg -3'
miRNA:   3'- -CGaCCGUuuUUGGAGaCuuCGCGU----GG- -5'
2765 3' -49.9 NC_001491.2 + 148308 0.7 0.952833
Target:  5'- uGCUGGagguGAGGACCgcgcggCUGAGGUgGCGCUc -3'
miRNA:   3'- -CGACCg---UUUUUGGa-----GACUUCG-CGUGG- -5'
2765 3' -49.9 NC_001491.2 + 147781 0.7 0.96074
Target:  5'- cGCUGGCcgccAgCUCcccGAAGCGCGCg -3'
miRNA:   3'- -CGACCGuuuuUgGAGa--CUUCGCGUGg -5'
2765 3' -49.9 NC_001491.2 + 147304 0.69 0.964328
Target:  5'- aGCcgGGCAuc-GCCUCcuggcUGAGGUGgGCCg -3'
miRNA:   3'- -CGa-CCGUuuuUGGAG-----ACUUCGCgUGG- -5'
2765 3' -49.9 NC_001491.2 + 147271 0.66 0.994278
Target:  5'- gGgaGGCGGccGCCUgaggGGAGCGgGCCu -3'
miRNA:   3'- -CgaCCGUUuuUGGAga--CUUCGCgUGG- -5'
2765 3' -49.9 NC_001491.2 + 145976 0.71 0.922976
Target:  5'- --cGGCAcgAAGACCgguaCUGggGCcuGCGCCu -3'
miRNA:   3'- cgaCCGU--UUUUGGa---GACuuCG--CGUGG- -5'
2765 3' -49.9 NC_001491.2 + 145798 0.77 0.688441
Target:  5'- cGCUGGUAGAcGCC-C-GggGCGCACg -3'
miRNA:   3'- -CGACCGUUUuUGGaGaCuuCGCGUGg -5'
2765 3' -49.9 NC_001491.2 + 145535 0.69 0.970803
Target:  5'- cGCgGGCGGuucGGGCCUCUccAGCGUcuugGCCa -3'
miRNA:   3'- -CGaCCGUU---UUUGGAGAcuUCGCG----UGG- -5'
2765 3' -49.9 NC_001491.2 + 145428 0.67 0.99118
Target:  5'- gGCUGggaGCGGGcGCCgaagCUGGAGCcggagcggguGCGCCg -3'
miRNA:   3'- -CGAC---CGUUUuUGGa---GACUUCG----------CGUGG- -5'
2765 3' -49.9 NC_001491.2 + 144692 0.69 0.970803
Target:  5'- gGCUGGguGAAccCCUCUucGGcCGCGCUg -3'
miRNA:   3'- -CGACCguUUUu-GGAGAcuUC-GCGUGG- -5'
2765 3' -49.9 NC_001491.2 + 144212 0.66 0.996432
Target:  5'- cGCUaGGuCGAAGcggGCCUC-GGAGC-CACCc -3'
miRNA:   3'- -CGA-CC-GUUUU---UGGAGaCUUCGcGUGG- -5'
2765 3' -49.9 NC_001491.2 + 142599 0.67 0.992333
Target:  5'- --gGGCAAAAAUUUUUGA-GCGCAa- -3'
miRNA:   3'- cgaCCGUUUUUGGAGACUuCGCGUgg -5'
2765 3' -49.9 NC_001491.2 + 141371 0.69 0.976388
Target:  5'- uGCUGGCAGuc-CCUCcUGcAGCuGCugCc -3'
miRNA:   3'- -CGACCGUUuuuGGAG-ACuUCG-CGugG- -5'
2765 3' -49.9 NC_001491.2 + 140121 0.68 0.986889
Target:  5'- --cGGCGGAGGCagcggacgcgCUCcGGAGCgGCGCCg -3'
miRNA:   3'- cgaCCGUUUUUG----------GAGaCUUCG-CGUGG- -5'
2765 3' -49.9 NC_001491.2 + 137677 0.67 0.989759
Target:  5'- aGCgGGCGcgGGAgcgcgcgagcgccGCCUC-GggGCGCGCa -3'
miRNA:   3'- -CGaCCGU--UUU-------------UGGAGaCuuCGCGUGg -5'
2765 3' -49.9 NC_001491.2 + 137093 0.69 0.976388
Target:  5'- -aUGGgGGAGacgggcACC-CUGAGGCaGCACCg -3'
miRNA:   3'- cgACCgUUUU------UGGaGACUUCG-CGUGG- -5'
2765 3' -49.9 NC_001491.2 + 127198 0.69 0.967356
Target:  5'- uCUGGCcAAAACUUCcGggGCGUuggucucgacgguACCa -3'
miRNA:   3'- cGACCGuUUUUGGAGaCuuCGCG-------------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.