miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2765 5' -57.2 NC_001491.2 + 40103 0.66 0.878791
Target:  5'- cGGACGCUGCgaCUGCC---CgCUGCg -3'
miRNA:   3'- cCCUGCGGCGaaGACGGcaaGgGAUG- -5'
2765 5' -57.2 NC_001491.2 + 16954 0.66 0.878791
Target:  5'- aGGGGCuCUGCggggcgUUUUGCCccaguUUCCCUGCg -3'
miRNA:   3'- -CCCUGcGGCG------AAGACGGc----AAGGGAUG- -5'
2765 5' -57.2 NC_001491.2 + 116641 0.66 0.871636
Target:  5'- gGGGACGCCuGCg--UGCUGg--CCUGCc -3'
miRNA:   3'- -CCCUGCGG-CGaagACGGCaagGGAUG- -5'
2765 5' -57.2 NC_001491.2 + 47521 0.66 0.856698
Target:  5'- aGGGGCGCCuCUUCUaauaaaaaGCCGgcgaCUACu -3'
miRNA:   3'- -CCCUGCGGcGAAGA--------CGGCaaggGAUG- -5'
2765 5' -57.2 NC_001491.2 + 117019 0.66 0.846558
Target:  5'- gGGGACGCCaugGCg---GCCGggaacgcgcucugggCCCUGCc -3'
miRNA:   3'- -CCCUGCGG---CGaagaCGGCaa-------------GGGAUG- -5'
2765 5' -57.2 NC_001491.2 + 145763 0.67 0.824485
Target:  5'- cGGGGCcgauGCUGCUgCUGCCGccgCCCc-- -3'
miRNA:   3'- -CCCUG----CGGCGAaGACGGCaa-GGGaug -5'
2765 5' -57.2 NC_001491.2 + 116243 0.68 0.789533
Target:  5'- gGGGAgGCCGUguccCUGCUGgcCCCa-- -3'
miRNA:   3'- -CCCUgCGGCGaa--GACGGCaaGGGaug -5'
2765 5' -57.2 NC_001491.2 + 124812 0.68 0.771189
Target:  5'- cGGAaccuuCGuCCGC--CUGCCGUUCCuCUACc -3'
miRNA:   3'- cCCU-----GC-GGCGaaGACGGCAAGG-GAUG- -5'
2765 5' -57.2 NC_001491.2 + 144452 0.68 0.761831
Target:  5'- cGGGCGCCGCUUCU-CUa--CCCUGg -3'
miRNA:   3'- cCCUGCGGCGAAGAcGGcaaGGGAUg -5'
2765 5' -57.2 NC_001491.2 + 70277 0.7 0.673599
Target:  5'- -uGACGCCGCgucaUCaGCCGccaaaucUCCCUGCu -3'
miRNA:   3'- ccCUGCGGCGa---AGaCGGCa------AGGGAUG- -5'
2765 5' -57.2 NC_001491.2 + 144829 0.73 0.503834
Target:  5'- aGGGCGaCCGCUUC-GCC-UUCCCUccGCg -3'
miRNA:   3'- cCCUGC-GGCGAAGaCGGcAAGGGA--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.