miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27651 3' -58.9 NC_005882.1 + 20508 0.66 0.388612
Target:  5'- aUGaCGCCGacCGGAUCGCUGCcgGCcgcGGUGa -3'
miRNA:   3'- cAC-GCGGC--GCUUAGCGACG--CGa--CCAU- -5'
27651 3' -58.9 NC_005882.1 + 23480 0.66 0.379482
Target:  5'- cGUGaCGCCGaCGAGcUGCUGauucgaGCUGGa- -3'
miRNA:   3'- -CAC-GCGGC-GCUUaGCGACg-----CGACCau -5'
27651 3' -58.9 NC_005882.1 + 19595 0.66 0.379482
Target:  5'- -cGCGUCgGCGAGcUGCUGCuugaGCUGGg- -3'
miRNA:   3'- caCGCGG-CGCUUaGCGACG----CGACCau -5'
27651 3' -58.9 NC_005882.1 + 22323 0.66 0.379482
Target:  5'- cGUGaCGCCGCuGGucgGUcCGCUGUaCUGGUAu -3'
miRNA:   3'- -CAC-GCGGCG-CU---UA-GCGACGcGACCAU- -5'
27651 3' -58.9 NC_005882.1 + 20348 0.66 0.378577
Target:  5'- uUGCGCCGCGAaaaaaugGUCGCggaccucGCGCa---- -3'
miRNA:   3'- cACGCGGCGCU-------UAGCGa------CGCGaccau -5'
27651 3' -58.9 NC_005882.1 + 33088 0.66 0.370497
Target:  5'- -gGCGCgGCGAuaUGCUGCGCaagcccGGUc -3'
miRNA:   3'- caCGCGgCGCUuaGCGACGCGa-----CCAu -5'
27651 3' -58.9 NC_005882.1 + 35836 0.66 0.344425
Target:  5'- -aGCGUCGCG-AUCGCUGCcuucuGCcGGa- -3'
miRNA:   3'- caCGCGGCGCuUAGCGACG-----CGaCCau -5'
27651 3' -58.9 NC_005882.1 + 23200 0.67 0.326974
Target:  5'- aUGCGCCGaucggcaCGAcgcUCGCgcagGCGCUGGc- -3'
miRNA:   3'- cACGCGGC-------GCUu--AGCGa---CGCGACCau -5'
27651 3' -58.9 NC_005882.1 + 13332 0.67 0.311757
Target:  5'- cGUGCGCCGCGAAgacuaCG-UGCGCa---- -3'
miRNA:   3'- -CACGCGGCGCUUa----GCgACGCGaccau -5'
27651 3' -58.9 NC_005882.1 + 12041 0.67 0.311757
Target:  5'- cGUGCGuuGCGcGUCaGCUcgGCGC-GGUAc -3'
miRNA:   3'- -CACGCggCGCuUAG-CGA--CGCGaCCAU- -5'
27651 3' -58.9 NC_005882.1 + 3381 0.67 0.303967
Target:  5'- uUGCG-CGCGGG-CGCUGCGCggccUGGg- -3'
miRNA:   3'- cACGCgGCGCUUaGCGACGCG----ACCau -5'
27651 3' -58.9 NC_005882.1 + 6655 0.67 0.303967
Target:  5'- cGUGCGUCuCGGcgUGCUGCGCcaaGGUu -3'
miRNA:   3'- -CACGCGGcGCUuaGCGACGCGa--CCAu -5'
27651 3' -58.9 NC_005882.1 + 17978 0.67 0.303967
Target:  5'- -cGCGCCGCGAAaUCGUcgUGuCGCcGGa- -3'
miRNA:   3'- caCGCGGCGCUU-AGCG--AC-GCGaCCau -5'
27651 3' -58.9 NC_005882.1 + 28730 0.69 0.216093
Target:  5'- -gGCGCCGCGGAacuuagcgCGCUGCucgccgucgagaGCUGGc- -3'
miRNA:   3'- caCGCGGCGCUUa-------GCGACG------------CGACCau -5'
27651 3' -58.9 NC_005882.1 + 30630 0.69 0.216093
Target:  5'- -cGgGCgGCGAuggCGCUGCGCUGa-- -3'
miRNA:   3'- caCgCGgCGCUua-GCGACGCGACcau -5'
27651 3' -58.9 NC_005882.1 + 23615 0.7 0.193801
Target:  5'- cGUGCGCCguacggGCGAcgucaucaacgaAUCGCUGCGCUa--- -3'
miRNA:   3'- -CACGCGG------CGCU------------UAGCGACGCGAccau -5'
27651 3' -58.9 NC_005882.1 + 18189 0.72 0.146708
Target:  5'- -gGCGCgaUGCGcaaGAUCGCgcagGCGCUGGUGc -3'
miRNA:   3'- caCGCG--GCGC---UUAGCGa---CGCGACCAU- -5'
27651 3' -58.9 NC_005882.1 + 30966 0.72 0.138636
Target:  5'- -gGCGauGCGGAUCGCUGCcCUGGg- -3'
miRNA:   3'- caCGCggCGCUUAGCGACGcGACCau -5'
27651 3' -58.9 NC_005882.1 + 18736 0.73 0.12729
Target:  5'- -gGCGCUGUGGcuAUCGUUGCGCgccucgGGUGg -3'
miRNA:   3'- caCGCGGCGCU--UAGCGACGCGa-----CCAU- -5'
27651 3' -58.9 NC_005882.1 + 26758 0.73 0.116809
Target:  5'- -gGCgGCCGCGAAcugCGCggUGCGCUGGa- -3'
miRNA:   3'- caCG-CGGCGCUUa--GCG--ACGCGACCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.