miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27651 5' -56.4 NC_005882.1 + 4916 0.66 0.546081
Target:  5'- cGUGCcGCgGCGCGGCagguaCGucGGAAGaUCg -3'
miRNA:   3'- aCAUGuUG-CGCGCCGg----GCu-CCUUC-AG- -5'
27651 5' -56.4 NC_005882.1 + 30524 0.66 0.524252
Target:  5'- -aUGCuGCGCGCGGCCgacaAGGugacGGUCg -3'
miRNA:   3'- acAUGuUGCGCGCCGGgc--UCCu---UCAG- -5'
27651 5' -56.4 NC_005882.1 + 12291 0.67 0.48167
Target:  5'- -cUAUAACG-GCGGCCUGGGcuGGGUCu -3'
miRNA:   3'- acAUGUUGCgCGCCGGGCUCc-UUCAG- -5'
27651 5' -56.4 NC_005882.1 + 18081 0.67 0.471284
Target:  5'- -cUGCcACGcCGCGGCaCCGGGGuuGUa -3'
miRNA:   3'- acAUGuUGC-GCGCCG-GGCUCCuuCAg -5'
27651 5' -56.4 NC_005882.1 + 1295 0.67 0.461013
Target:  5'- ---uCAACG-GUGGCCgCGAGGAAG-Cg -3'
miRNA:   3'- acauGUUGCgCGCCGG-GCUCCUUCaG- -5'
27651 5' -56.4 NC_005882.1 + 15005 0.67 0.440834
Target:  5'- cGUACG--GCGCGGaugCUGAGGAAGa- -3'
miRNA:   3'- aCAUGUugCGCGCCg--GGCUCCUUCag -5'
27651 5' -56.4 NC_005882.1 + 21794 0.68 0.410577
Target:  5'- cUGgcgACGGCGCGCGggaccuucauuucGCCCGGcucGGgcGUCg -3'
miRNA:   3'- -ACa--UGUUGCGCGC-------------CGGGCU---CCuuCAG- -5'
27651 5' -56.4 NC_005882.1 + 31672 0.68 0.38347
Target:  5'- gGU-CAGCGCGgaCGGCUaCGAGGAGGa- -3'
miRNA:   3'- aCAuGUUGCGC--GCCGG-GCUCCUUCag -5'
27651 5' -56.4 NC_005882.1 + 26688 0.7 0.323109
Target:  5'- --aGCAGCGCGCGGCCaaccguGAucccGAGGUCc -3'
miRNA:   3'- acaUGUUGCGCGCCGGg-----CUc---CUUCAG- -5'
27651 5' -56.4 NC_005882.1 + 24209 0.7 0.315087
Target:  5'- cGUAUGGCGCacaaGGCCgCGugcGGGAAGUCa -3'
miRNA:   3'- aCAUGUUGCGcg--CCGG-GC---UCCUUCAG- -5'
27651 5' -56.4 NC_005882.1 + 15654 0.7 0.315087
Target:  5'- cUGUACGGCGCGCaGGUCCGc-GAGcacGUCg -3'
miRNA:   3'- -ACAUGUUGCGCG-CCGGGCucCUU---CAG- -5'
27651 5' -56.4 NC_005882.1 + 18996 0.72 0.236724
Target:  5'- --gACAACGCGcCGGCgUGGGGcuGGGUCg -3'
miRNA:   3'- acaUGUUGCGC-GCCGgGCUCC--UUCAG- -5'
27651 5' -56.4 NC_005882.1 + 4884 0.73 0.212555
Target:  5'- aGUuCGACGCGCGGCgcaaCGAGGucGUg -3'
miRNA:   3'- aCAuGUUGCGCGCCGg---GCUCCuuCAg -5'
27651 5' -56.4 NC_005882.1 + 25117 0.75 0.14005
Target:  5'- --cACGACgGC-CGGCCCGAGGAAGg- -3'
miRNA:   3'- acaUGUUG-CGcGCCGGGCUCCUUCag -5'
27651 5' -56.4 NC_005882.1 + 13509 1.1 0.000371
Target:  5'- cUGUACAACGCGCGGCCCGAGGAAGUCg -3'
miRNA:   3'- -ACAUGUUGCGCGCCGGGCUCCUUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.