miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27652 5' -53.9 NC_005882.1 + 31510 0.66 0.731987
Target:  5'- ---cGCGACCGAcacCGAcguGACGCUcGUCg -3'
miRNA:   3'- ccuuCGCUGGCU---GCUu--CUGCGGcUAG- -5'
27652 5' -53.9 NC_005882.1 + 28592 0.66 0.731987
Target:  5'- -aAGGCGGCuUGGCGAAcGCGaCGAUCg -3'
miRNA:   3'- ccUUCGCUG-GCUGCUUcUGCgGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 19933 0.66 0.731987
Target:  5'- --cGGCGGCCG-CGAAcGCGgUGAUCc -3'
miRNA:   3'- ccuUCGCUGGCuGCUUcUGCgGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 30138 0.66 0.731987
Target:  5'- -uGAGCGAgacccUCGACGAGuucGGCGCgaCGAUCa -3'
miRNA:   3'- ccUUCGCU-----GGCUGCUU---CUGCG--GCUAG- -5'
27652 5' -53.9 NC_005882.1 + 21967 0.66 0.731987
Target:  5'- cGGAuAGCuGACCaGC-AAcGCGCCGAUCg -3'
miRNA:   3'- -CCU-UCG-CUGGcUGcUUcUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 11988 0.66 0.731987
Target:  5'- ---cGCGGCCacgggcGCGgcGGCGCCGAg- -3'
miRNA:   3'- ccuuCGCUGGc-----UGCuuCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 33433 0.66 0.728732
Target:  5'- cGGuGGCuggcguuccuaaugGugCGACGAucacaaucGGAgCGCCGGUCa -3'
miRNA:   3'- -CCuUCG--------------CugGCUGCU--------UCU-GCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 35377 0.66 0.721103
Target:  5'- cGGAGGCGcuuCUGGC--AGGCcuaccggaGCCGAUCg -3'
miRNA:   3'- -CCUUCGCu--GGCUGcuUCUG--------CGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 26574 0.66 0.721103
Target:  5'- cGGAgcuGGCGACCGuCGcguGGgGCCGcuuUCa -3'
miRNA:   3'- -CCU---UCGCUGGCuGCuu-CUgCGGCu--AG- -5'
27652 5' -53.9 NC_005882.1 + 22170 0.66 0.721103
Target:  5'- cGGcGGGCG-CCGugauuguCGAAGACGCgGAg- -3'
miRNA:   3'- -CC-UUCGCuGGCu------GCUUCUGCGgCUag -5'
27652 5' -53.9 NC_005882.1 + 1657 0.66 0.721103
Target:  5'- cGGcAAGgGGCUGA--AGGACGCCG-UCa -3'
miRNA:   3'- -CC-UUCgCUGGCUgcUUCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 26764 0.66 0.720009
Target:  5'- gGGAugGGCGGCCG-CGAacugcgcGGuGCGCUgGAUCa -3'
miRNA:   3'- -CCU--UCGCUGGCuGCU-------UC-UGCGG-CUAG- -5'
27652 5' -53.9 NC_005882.1 + 32978 0.66 0.710127
Target:  5'- --cGGCGGCCGcACgcgcuaccuGAAGGCGCaGGUCg -3'
miRNA:   3'- ccuUCGCUGGC-UG---------CUUCUGCGgCUAG- -5'
27652 5' -53.9 NC_005882.1 + 32056 0.66 0.699069
Target:  5'- cGAccGGCG-UCGGCGAucGGACGUCGAc- -3'
miRNA:   3'- cCU--UCGCuGGCUGCU--UCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 8160 0.66 0.699069
Target:  5'- cGucGCGGCCGGuCG-GGAUGUCGAUg -3'
miRNA:   3'- cCuuCGCUGGCU-GCuUCUGCGGCUAg -5'
27652 5' -53.9 NC_005882.1 + 12727 0.66 0.699069
Target:  5'- cGGcGGCGcucGCCGGCGAccuguuCGCCGAg- -3'
miRNA:   3'- -CCuUCGC---UGGCUGCUucu---GCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 21103 0.66 0.676761
Target:  5'- uGGAAGCGguucagGCCGGCGGcagcgguaacGGACGUgguaagGAUCg -3'
miRNA:   3'- -CCUUCGC------UGGCUGCU----------UCUGCGg-----CUAG- -5'
27652 5' -53.9 NC_005882.1 + 17996 0.67 0.665534
Target:  5'- cGGAAcgucGCGACCucGCGcAGcuCGCCGGUCu -3'
miRNA:   3'- -CCUU----CGCUGGc-UGCuUCu-GCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 472 0.67 0.654275
Target:  5'- -aAGGCGGuCCGGCGcgagGAGAuCGCCGcUCg -3'
miRNA:   3'- ccUUCGCU-GGCUGC----UUCU-GCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 27457 0.67 0.654275
Target:  5'- uGAAGCGAUUG-CGAauaccguugaccAGAcCGUCGAUCa -3'
miRNA:   3'- cCUUCGCUGGCuGCU------------UCU-GCGGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.