Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27652 | 5' | -53.9 | NC_005882.1 | + | 14074 | 1.11 | 0.000691 |
Target: 5'- aGGAAGCGACCGACGAAGACGCCGAUCc -3' miRNA: 3'- -CCUUCGCUGGCUGCUUCUGCGGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 26140 | 0.8 | 0.113183 |
Target: 5'- cGAAGuCGGCCG-CGAAGGCGCCGGc- -3' miRNA: 3'- cCUUC-GCUGGCuGCUUCUGCGGCUag -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 20484 | 0.77 | 0.16857 |
Target: 5'- aGGAAGCGAuCCGcACGAAGAucggcCGCCGGc- -3' miRNA: 3'- -CCUUCGCU-GGC-UGCUUCU-----GCGGCUag -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 16805 | 0.77 | 0.16857 |
Target: 5'- uGGAuuuGCGACCuGAacuuCGAcGGCGCCGAUCg -3' miRNA: 3'- -CCUu--CGCUGG-CU----GCUuCUGCGGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 25707 | 0.75 | 0.253657 |
Target: 5'- cGGgcGCGGCCGugGcAGcCGCCG-UCg -3' miRNA: 3'- -CCuuCGCUGGCugCuUCuGCGGCuAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 12541 | 0.74 | 0.267356 |
Target: 5'- cGGcGGCGGCCGGCGcu-GCGgCGAUCg -3' miRNA: 3'- -CCuUCGCUGGCUGCuucUGCgGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 25110 | 0.74 | 0.274427 |
Target: 5'- uGGcuuuGCGGCCGGCucGGGCGCCGGg- -3' miRNA: 3'- -CCuu--CGCUGGCUGcuUCUGCGGCUag -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 14206 | 0.74 | 0.296536 |
Target: 5'- cGGAAGCGGCCGcCGcGGcCGUCGAc- -3' miRNA: 3'- -CCUUCGCUGGCuGCuUCuGCGGCUag -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 15262 | 0.73 | 0.320005 |
Target: 5'- cGGAcuGGCGACCuGACGGuccacguGcCGCUGAUCg -3' miRNA: 3'- -CCU--UCGCUGG-CUGCUu------CuGCGGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 17878 | 0.72 | 0.360392 |
Target: 5'- cGAGGCGGCCGGCGAccgccucggcacGACGCUcaagcuGGUCa -3' miRNA: 3'- cCUUCGCUGGCUGCUu-----------CUGCGG------CUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 27616 | 0.72 | 0.362149 |
Target: 5'- --cGGCGaccGCCGACGAGcgcccGAUGCCGAUUg -3' miRNA: 3'- ccuUCGC---UGGCUGCUU-----CUGCGGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 12663 | 0.72 | 0.371028 |
Target: 5'- cGGcAAGCGcACCGGCGugauAGcCGCCGAa- -3' miRNA: 3'- -CC-UUCGC-UGGCUGCu---UCuGCGGCUag -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 23180 | 0.72 | 0.380054 |
Target: 5'- cGggGCGAUCGcguacauCGAu-GCGCCGAUCg -3' miRNA: 3'- cCuuCGCUGGCu------GCUucUGCGGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 3942 | 0.71 | 0.397603 |
Target: 5'- ---cGUGAUCGACGAAGcgcacgcGCuGCCGAUCg -3' miRNA: 3'- ccuuCGCUGGCUGCUUC-------UG-CGGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 15741 | 0.71 | 0.407047 |
Target: 5'- gGGAccGGUGACCGccaagucGCGgcGGCGCCGcUCc -3' miRNA: 3'- -CCU--UCGCUGGC-------UGCuuCUGCGGCuAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 29248 | 0.71 | 0.407999 |
Target: 5'- cGAAGCGGCCGcacGCGAGcaacggcgcgccGGCguaGCCGAUCu -3' miRNA: 3'- cCUUCGCUGGC---UGCUU------------CUG---CGGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 28894 | 0.71 | 0.407999 |
Target: 5'- cGGucguuGCGGCCGACGAcguaGCCGAUg -3' miRNA: 3'- -CCuu---CGCUGGCUGCUucugCGGCUAg -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 31972 | 0.71 | 0.437194 |
Target: 5'- --cGGCGGCCGcugaccgauuACGucGACGuCCGAUCg -3' miRNA: 3'- ccuUCGCUGGC----------UGCuuCUGC-GGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 21423 | 0.71 | 0.437194 |
Target: 5'- --cGGCGcACCGGCGccGACGaCGAUCa -3' miRNA: 3'- ccuUCGC-UGGCUGCuuCUGCgGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 29867 | 0.7 | 0.488383 |
Target: 5'- cGAAGCuGGCCGcCGGu-GCGUCGAUCg -3' miRNA: 3'- cCUUCG-CUGGCuGCUucUGCGGCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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