miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27652 5' -53.9 NC_005882.1 + 27457 0.67 0.654275
Target:  5'- uGAAGCGAUUG-CGAauaccguugaccAGAcCGUCGAUCa -3'
miRNA:   3'- cCUUCGCUGGCuGCU------------UCU-GCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 21125 0.67 0.642994
Target:  5'- cGAAaCGACCGccgaugucgGCGAGcaaGCGCCGGUCa -3'
miRNA:   3'- cCUUcGCUGGC---------UGCUUc--UGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 22310 0.67 0.642994
Target:  5'- aGGAAGUGAugcuucauaCgGGCGcAGACGUCGAg- -3'
miRNA:   3'- -CCUUCGCU---------GgCUGCuUCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 16284 0.67 0.631702
Target:  5'- --cAGuCGGCCGGCuugccGAcGACGUCGAUCg -3'
miRNA:   3'- ccuUC-GCUGGCUG-----CUuCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 27083 0.67 0.631702
Target:  5'- gGGAGcagcgcGCGGCCaacGACGAGcGCGCCGcgCc -3'
miRNA:   3'- -CCUU------CGCUGG---CUGCUUcUGCGGCuaG- -5'
27652 5' -53.9 NC_005882.1 + 23501 0.67 0.631702
Target:  5'- cGAcAGCGGCCGcuCGAcgcccguGACGCCGAc- -3'
miRNA:   3'- cCU-UCGCUGGCu-GCUu------CUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 13964 0.67 0.620411
Target:  5'- cGGAAGcCGACgcauccUGAcCGAAGGCGCagcggaCGAUCa -3'
miRNA:   3'- -CCUUC-GCUG------GCU-GCUUCUGCG------GCUAG- -5'
27652 5' -53.9 NC_005882.1 + 31213 0.67 0.620411
Target:  5'- cGAGGCGcgcACUGGC-AAGACGCUGuAUCc -3'
miRNA:   3'- cCUUCGC---UGGCUGcUUCUGCGGC-UAG- -5'
27652 5' -53.9 NC_005882.1 + 28938 0.67 0.620411
Target:  5'- uGGAucGGUGAUCGACaccccGACGUCGGUUg -3'
miRNA:   3'- -CCU--UCGCUGGCUGcuu--CUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 22868 0.67 0.620411
Target:  5'- -cGGGCGGCaCGACGu--ACGCCGAa- -3'
miRNA:   3'- ccUUCGCUG-GCUGCuucUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 29015 0.68 0.597871
Target:  5'- gGGAcgucGGCaACCGACGucgGGGUGUCGAUCa -3'
miRNA:   3'- -CCU----UCGcUGGCUGCu--UCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 695 0.68 0.597871
Target:  5'- -cGAGCuGGCCGACaucGGCGCCGAc- -3'
miRNA:   3'- ccUUCG-CUGGCUGcuuCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 10791 0.68 0.586643
Target:  5'- cGAGGCGAUCGAaGAAcgcGCGCCGGc- -3'
miRNA:   3'- cCUUCGCUGGCUgCUUc--UGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 5159 0.68 0.586643
Target:  5'- --cAGUGAUCGGCGAaagcuaccggcGGcACGCCGAUa -3'
miRNA:   3'- ccuUCGCUGGCUGCU-----------UC-UGCGGCUAg -5'
27652 5' -53.9 NC_005882.1 + 31706 0.68 0.586643
Target:  5'- uGGuguuAGCGACCGucACGucGACGUCGcccagGUCg -3'
miRNA:   3'- -CCu---UCGCUGGC--UGCuuCUGCGGC-----UAG- -5'
27652 5' -53.9 NC_005882.1 + 11006 0.68 0.586643
Target:  5'- cGGcuGaCGAUCGAggcCGAGGAacCGCCGGUCc -3'
miRNA:   3'- -CCuuC-GCUGGCU---GCUUCU--GCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 28034 0.68 0.586643
Target:  5'- cGGAAGCcgaGCUGGCGAAGcuGCGCgCGGc- -3'
miRNA:   3'- -CCUUCGc--UGGCUGCUUC--UGCG-GCUag -5'
27652 5' -53.9 NC_005882.1 + 23045 0.68 0.586643
Target:  5'- cGGAAuGCGcACgggGAUGAAGGCGCUGAa- -3'
miRNA:   3'- -CCUU-CGC-UGg--CUGCUUCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 6358 0.68 0.579924
Target:  5'- aGGAAGCcACCGugaccACGcAAcgcaaacgccgugucGACGCCGGUCa -3'
miRNA:   3'- -CCUUCGcUGGC-----UGC-UU---------------CUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 17037 0.68 0.575454
Target:  5'- cGAAGCGcCCGACcAGGACGCgcuCGAc- -3'
miRNA:   3'- cCUUCGCuGGCUGcUUCUGCG---GCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.