miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27652 5' -53.9 NC_005882.1 + 17037 0.68 0.575454
Target:  5'- cGAAGCGcCCGACcAGGACGCgcuCGAc- -3'
miRNA:   3'- cCUUCGCuGGCUGcUUCUGCG---GCUag -5'
27652 5' -53.9 NC_005882.1 + 19244 0.68 0.564314
Target:  5'- --cAGCGACgGcaACGAAGGCGUCG-UCg -3'
miRNA:   3'- ccuUCGCUGgC--UGCUUCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 32023 0.69 0.553233
Target:  5'- cGGucAGCGGCCGcCGAcgcuCGUCGGUCa -3'
miRNA:   3'- -CCu-UCGCUGGCuGCUucu-GCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 2169 0.69 0.553233
Target:  5'- ---uGCGACCGACaAGGAagGCCaGAUCa -3'
miRNA:   3'- ccuuCGCUGGCUGcUUCUg-CGG-CUAG- -5'
27652 5' -53.9 NC_005882.1 + 30242 0.69 0.553232
Target:  5'- aGGAccauguGGCuGCCGAucgcguaccCGAAGACccugGCCGAUCa -3'
miRNA:   3'- -CCU------UCGcUGGCU---------GCUUCUG----CGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 17089 0.69 0.553232
Target:  5'- ---cGCGaccugaauGCCGACGcgcAGGCGCUGGUCg -3'
miRNA:   3'- ccuuCGC--------UGGCUGCu--UCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 16593 0.69 0.541119
Target:  5'- aGGAAGCaGCCGGC-AAGaccgguaGCGCCGAc- -3'
miRNA:   3'- -CCUUCGcUGGCUGcUUC-------UGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 16130 0.69 0.531274
Target:  5'- cGGAucGUGACCGA-GAugcuGGACGCCG-UCc -3'
miRNA:   3'- -CCUu-CGCUGGCUgCU----UCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 19808 0.69 0.531274
Target:  5'- -cGAGCGcGCCGGCGugacgacgacGGGCGCCGAc- -3'
miRNA:   3'- ccUUCGC-UGGCUGCu---------UCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 17301 0.69 0.520413
Target:  5'- uGAAGCuGCCGcCGAAGAaGgCGAUCg -3'
miRNA:   3'- cCUUCGcUGGCuGCUUCUgCgGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 12059 0.69 0.520413
Target:  5'- aGGAgAGCcGCUGGCGcgcGGACGCCG-UCa -3'
miRNA:   3'- -CCU-UCGcUGGCUGCu--UCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 12631 0.69 0.520413
Target:  5'- -aAAGCGACCG-CGccAGccgccaguGCGCCGAUCg -3'
miRNA:   3'- ccUUCGCUGGCuGCu-UC--------UGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 30434 0.69 0.520413
Target:  5'- cGGGcgGGCGAUCGGCaucggaguaGAuGGCGCCGAg- -3'
miRNA:   3'- -CCU--UCGCUGGCUG---------CUuCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 19482 0.69 0.520413
Target:  5'- ---cGCGuuCGGCGAAuGCGCUGGUCg -3'
miRNA:   3'- ccuuCGCugGCUGCUUcUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 16962 0.69 0.50964
Target:  5'- aGGAuGCGACCugGACGAGcGGCcgcuGCCGGUg -3'
miRNA:   3'- -CCUuCGCUGG--CUGCUU-CUG----CGGCUAg -5'
27652 5' -53.9 NC_005882.1 + 31129 0.69 0.50964
Target:  5'- cGGAGGUG-CCG-CGAuGACGCuCGGUg -3'
miRNA:   3'- -CCUUCGCuGGCuGCUuCUGCG-GCUAg -5'
27652 5' -53.9 NC_005882.1 + 2162 0.69 0.506426
Target:  5'- cGggGCGugCGuccgucguccaaucGCGAAGGCacucGUCGAUCa -3'
miRNA:   3'- cCuuCGCugGC--------------UGCUUCUG----CGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 25737 0.69 0.498961
Target:  5'- aGGuGGCGGCCuGcCGAAcaGCGCCGAUUa -3'
miRNA:   3'- -CCuUCGCUGG-CuGCUUc-UGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 8778 0.7 0.491545
Target:  5'- cGAAGCGaggucucGCCGAUGAccgggcugucgacguGGugGCCGAa- -3'
miRNA:   3'- cCUUCGC-------UGGCUGCU---------------UCugCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 12334 0.7 0.488383
Target:  5'- ----aCGGCUGcCGgcGGCGCCGAUCg -3'
miRNA:   3'- ccuucGCUGGCuGCuuCUGCGGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.