miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27652 5' -53.9 NC_005882.1 + 472 0.67 0.654275
Target:  5'- -aAGGCGGuCCGGCGcgagGAGAuCGCCGcUCg -3'
miRNA:   3'- ccUUCGCU-GGCUGC----UUCU-GCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 695 0.68 0.597871
Target:  5'- -cGAGCuGGCCGACaucGGCGCCGAc- -3'
miRNA:   3'- ccUUCG-CUGGCUGcuuCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 1657 0.66 0.721103
Target:  5'- cGGcAAGgGGCUGA--AGGACGCCG-UCa -3'
miRNA:   3'- -CC-UUCgCUGGCUgcUUCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 2162 0.69 0.506426
Target:  5'- cGggGCGugCGuccgucguccaaucGCGAAGGCacucGUCGAUCa -3'
miRNA:   3'- cCuuCGCugGC--------------UGCUUCUG----CGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 2169 0.69 0.553233
Target:  5'- ---uGCGACCGACaAGGAagGCCaGAUCa -3'
miRNA:   3'- ccuuCGCUGGCUGcUUCUg-CGG-CUAG- -5'
27652 5' -53.9 NC_005882.1 + 3942 0.71 0.397603
Target:  5'- ---cGUGAUCGACGAAGcgcacgcGCuGCCGAUCg -3'
miRNA:   3'- ccuuCGCUGGCUGCUUC-------UG-CGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 5159 0.68 0.586643
Target:  5'- --cAGUGAUCGGCGAaagcuaccggcGGcACGCCGAUa -3'
miRNA:   3'- ccuUCGCUGGCUGCU-----------UC-UGCGGCUAg -5'
27652 5' -53.9 NC_005882.1 + 6358 0.68 0.579924
Target:  5'- aGGAAGCcACCGugaccACGcAAcgcaaacgccgugucGACGCCGGUCa -3'
miRNA:   3'- -CCUUCGcUGGC-----UGC-UU---------------CUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 8160 0.66 0.699069
Target:  5'- cGucGCGGCCGGuCG-GGAUGUCGAUg -3'
miRNA:   3'- cCuuCGCUGGCU-GCuUCUGCGGCUAg -5'
27652 5' -53.9 NC_005882.1 + 8778 0.7 0.491545
Target:  5'- cGAAGCGaggucucGCCGAUGAccgggcugucgacguGGugGCCGAa- -3'
miRNA:   3'- cCUUCGC-------UGGCUGCU---------------UCugCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 10791 0.68 0.586643
Target:  5'- cGAGGCGAUCGAaGAAcgcGCGCCGGc- -3'
miRNA:   3'- cCUUCGCUGGCUgCUUc--UGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 11006 0.68 0.586643
Target:  5'- cGGcuGaCGAUCGAggcCGAGGAacCGCCGGUCc -3'
miRNA:   3'- -CCuuC-GCUGGCU---GCUUCU--GCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 11988 0.66 0.731987
Target:  5'- ---cGCGGCCacgggcGCGgcGGCGCCGAg- -3'
miRNA:   3'- ccuuCGCUGGc-----UGCuuCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 12059 0.69 0.520413
Target:  5'- aGGAgAGCcGCUGGCGcgcGGACGCCG-UCa -3'
miRNA:   3'- -CCU-UCGcUGGCUGCu--UCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 12334 0.7 0.488383
Target:  5'- ----aCGGCUGcCGgcGGCGCCGAUCg -3'
miRNA:   3'- ccuucGCUGGCuGCuuCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 12541 0.74 0.267356
Target:  5'- cGGcGGCGGCCGGCGcu-GCGgCGAUCg -3'
miRNA:   3'- -CCuUCGCUGGCUGCuucUGCgGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 12631 0.69 0.520413
Target:  5'- -aAAGCGACCG-CGccAGccgccaguGCGCCGAUCg -3'
miRNA:   3'- ccUUCGCUGGCuGCu-UC--------UGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 12663 0.72 0.371028
Target:  5'- cGGcAAGCGcACCGGCGugauAGcCGCCGAa- -3'
miRNA:   3'- -CC-UUCGC-UGGCUGCu---UCuGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 12727 0.66 0.699069
Target:  5'- cGGcGGCGcucGCCGGCGAccuguuCGCCGAg- -3'
miRNA:   3'- -CCuUCGC---UGGCUGCUucu---GCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 13964 0.67 0.620411
Target:  5'- cGGAAGcCGACgcauccUGAcCGAAGGCGCagcggaCGAUCa -3'
miRNA:   3'- -CCUUC-GCUG------GCU-GCUUCUGCG------GCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.