miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27652 5' -53.9 NC_005882.1 + 14074 1.11 0.000691
Target:  5'- aGGAAGCGACCGACGAAGACGCCGAUCc -3'
miRNA:   3'- -CCUUCGCUGGCUGCUUCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 14206 0.74 0.296536
Target:  5'- cGGAAGCGGCCGcCGcGGcCGUCGAc- -3'
miRNA:   3'- -CCUUCGCUGGCuGCuUCuGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 15262 0.73 0.320005
Target:  5'- cGGAcuGGCGACCuGACGGuccacguGcCGCUGAUCg -3'
miRNA:   3'- -CCU--UCGCUGG-CUGCUu------CuGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 15741 0.71 0.407047
Target:  5'- gGGAccGGUGACCGccaagucGCGgcGGCGCCGcUCc -3'
miRNA:   3'- -CCU--UCGCUGGC-------UGCuuCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 16130 0.69 0.531274
Target:  5'- cGGAucGUGACCGA-GAugcuGGACGCCG-UCc -3'
miRNA:   3'- -CCUu-CGCUGGCUgCU----UCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 16284 0.67 0.631702
Target:  5'- --cAGuCGGCCGGCuugccGAcGACGUCGAUCg -3'
miRNA:   3'- ccuUC-GCUGGCUG-----CUuCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 16593 0.69 0.541119
Target:  5'- aGGAAGCaGCCGGC-AAGaccgguaGCGCCGAc- -3'
miRNA:   3'- -CCUUCGcUGGCUGcUUC-------UGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 16805 0.77 0.16857
Target:  5'- uGGAuuuGCGACCuGAacuuCGAcGGCGCCGAUCg -3'
miRNA:   3'- -CCUu--CGCUGG-CU----GCUuCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 16962 0.69 0.50964
Target:  5'- aGGAuGCGACCugGACGAGcGGCcgcuGCCGGUg -3'
miRNA:   3'- -CCUuCGCUGG--CUGCUU-CUG----CGGCUAg -5'
27652 5' -53.9 NC_005882.1 + 17037 0.68 0.575454
Target:  5'- cGAAGCGcCCGACcAGGACGCgcuCGAc- -3'
miRNA:   3'- cCUUCGCuGGCUGcUUCUGCG---GCUag -5'
27652 5' -53.9 NC_005882.1 + 17089 0.69 0.553232
Target:  5'- ---cGCGaccugaauGCCGACGcgcAGGCGCUGGUCg -3'
miRNA:   3'- ccuuCGC--------UGGCUGCu--UCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 17301 0.69 0.520413
Target:  5'- uGAAGCuGCCGcCGAAGAaGgCGAUCg -3'
miRNA:   3'- cCUUCGcUGGCuGCUUCUgCgGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 17327 0.67 0.654275
Target:  5'- cGAGGuCGACCGcuucaggcAUGGAGACGCCc--- -3'
miRNA:   3'- cCUUC-GCUGGC--------UGCUUCUGCGGcuag -5'
27652 5' -53.9 NC_005882.1 + 17878 0.72 0.360392
Target:  5'- cGAGGCGGCCGGCGAccgccucggcacGACGCUcaagcuGGUCa -3'
miRNA:   3'- cCUUCGCUGGCUGCUu-----------CUGCGG------CUAG- -5'
27652 5' -53.9 NC_005882.1 + 17996 0.67 0.665534
Target:  5'- cGGAAcgucGCGACCucGCGcAGcuCGCCGGUCu -3'
miRNA:   3'- -CCUU----CGCUGGc-UGCuUCu-GCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 19244 0.68 0.564314
Target:  5'- --cAGCGACgGcaACGAAGGCGUCG-UCg -3'
miRNA:   3'- ccuUCGCUGgC--UGCUUCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 19482 0.69 0.520413
Target:  5'- ---cGCGuuCGGCGAAuGCGCUGGUCg -3'
miRNA:   3'- ccuuCGCugGCUGCUUcUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 19808 0.69 0.531274
Target:  5'- -cGAGCGcGCCGGCGugacgacgacGGGCGCCGAc- -3'
miRNA:   3'- ccUUCGC-UGGCUGCu---------UCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 19933 0.66 0.731987
Target:  5'- --cGGCGGCCG-CGAAcGCGgUGAUCc -3'
miRNA:   3'- ccuUCGCUGGCuGCUUcUGCgGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 20484 0.77 0.16857
Target:  5'- aGGAAGCGAuCCGcACGAAGAucggcCGCCGGc- -3'
miRNA:   3'- -CCUUCGCU-GGC-UGCUUCU-----GCGGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.