miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27652 5' -53.9 NC_005882.1 + 35377 0.66 0.721103
Target:  5'- cGGAGGCGcuuCUGGC--AGGCcuaccggaGCCGAUCg -3'
miRNA:   3'- -CCUUCGCu--GGCUGcuUCUG--------CGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 33433 0.66 0.728732
Target:  5'- cGGuGGCuggcguuccuaaugGugCGACGAucacaaucGGAgCGCCGGUCa -3'
miRNA:   3'- -CCuUCG--------------CugGCUGCU--------UCU-GCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 32978 0.66 0.710127
Target:  5'- --cGGCGGCCGcACgcgcuaccuGAAGGCGCaGGUCg -3'
miRNA:   3'- ccuUCGCUGGC-UG---------CUUCUGCGgCUAG- -5'
27652 5' -53.9 NC_005882.1 + 32056 0.66 0.699069
Target:  5'- cGAccGGCG-UCGGCGAucGGACGUCGAc- -3'
miRNA:   3'- cCU--UCGCuGGCUGCU--UCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 32023 0.69 0.553233
Target:  5'- cGGucAGCGGCCGcCGAcgcuCGUCGGUCa -3'
miRNA:   3'- -CCu-UCGCUGGCuGCUucu-GCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 31972 0.71 0.437194
Target:  5'- --cGGCGGCCGcugaccgauuACGucGACGuCCGAUCg -3'
miRNA:   3'- ccuUCGCUGGC----------UGCuuCUGC-GGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 31706 0.68 0.586643
Target:  5'- uGGuguuAGCGACCGucACGucGACGUCGcccagGUCg -3'
miRNA:   3'- -CCu---UCGCUGGC--UGCuuCUGCGGC-----UAG- -5'
27652 5' -53.9 NC_005882.1 + 31510 0.66 0.731987
Target:  5'- ---cGCGACCGAcacCGAcguGACGCUcGUCg -3'
miRNA:   3'- ccuuCGCUGGCU---GCUu--CUGCGGcUAG- -5'
27652 5' -53.9 NC_005882.1 + 31213 0.67 0.620411
Target:  5'- cGAGGCGcgcACUGGC-AAGACGCUGuAUCc -3'
miRNA:   3'- cCUUCGC---UGGCUGcUUCUGCGGC-UAG- -5'
27652 5' -53.9 NC_005882.1 + 31129 0.69 0.50964
Target:  5'- cGGAGGUG-CCG-CGAuGACGCuCGGUg -3'
miRNA:   3'- -CCUUCGCuGGCuGCUuCUGCG-GCUAg -5'
27652 5' -53.9 NC_005882.1 + 30434 0.69 0.520413
Target:  5'- cGGGcgGGCGAUCGGCaucggaguaGAuGGCGCCGAg- -3'
miRNA:   3'- -CCU--UCGCUGGCUG---------CUuCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 30242 0.69 0.553232
Target:  5'- aGGAccauguGGCuGCCGAucgcguaccCGAAGACccugGCCGAUCa -3'
miRNA:   3'- -CCU------UCGcUGGCU---------GCUUCUG----CGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 30138 0.66 0.731987
Target:  5'- -uGAGCGAgacccUCGACGAGuucGGCGCgaCGAUCa -3'
miRNA:   3'- ccUUCGCU-----GGCUGCUU---CUGCG--GCUAG- -5'
27652 5' -53.9 NC_005882.1 + 29867 0.7 0.488383
Target:  5'- cGAAGCuGGCCGcCGGu-GCGUCGAUCg -3'
miRNA:   3'- cCUUCG-CUGGCuGCUucUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 29248 0.71 0.407999
Target:  5'- cGAAGCGGCCGcacGCGAGcaacggcgcgccGGCguaGCCGAUCu -3'
miRNA:   3'- cCUUCGCUGGC---UGCUU------------CUG---CGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 29015 0.68 0.597871
Target:  5'- gGGAcgucGGCaACCGACGucgGGGUGUCGAUCa -3'
miRNA:   3'- -CCU----UCGcUGGCUGCu--UCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 28938 0.67 0.620411
Target:  5'- uGGAucGGUGAUCGACaccccGACGUCGGUUg -3'
miRNA:   3'- -CCU--UCGCUGGCUGcuu--CUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 28894 0.71 0.407999
Target:  5'- cGGucguuGCGGCCGACGAcguaGCCGAUg -3'
miRNA:   3'- -CCuu---CGCUGGCUGCUucugCGGCUAg -5'
27652 5' -53.9 NC_005882.1 + 28592 0.66 0.731987
Target:  5'- -aAGGCGGCuUGGCGAAcGCGaCGAUCg -3'
miRNA:   3'- ccUUCGCUG-GCUGCUUcUGCgGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 28034 0.68 0.586643
Target:  5'- cGGAAGCcgaGCUGGCGAAGcuGCGCgCGGc- -3'
miRNA:   3'- -CCUUCGc--UGGCUGCUUC--UGCG-GCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.