Results 61 - 80 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27652 | 5' | -53.9 | NC_005882.1 | + | 13964 | 0.67 | 0.620411 |
Target: 5'- cGGAAGcCGACgcauccUGAcCGAAGGCGCagcggaCGAUCa -3' miRNA: 3'- -CCUUC-GCUG------GCU-GCUUCUGCG------GCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 12727 | 0.66 | 0.699069 |
Target: 5'- cGGcGGCGcucGCCGGCGAccuguuCGCCGAg- -3' miRNA: 3'- -CCuUCGC---UGGCUGCUucu---GCGGCUag -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 12663 | 0.72 | 0.371028 |
Target: 5'- cGGcAAGCGcACCGGCGugauAGcCGCCGAa- -3' miRNA: 3'- -CC-UUCGC-UGGCUGCu---UCuGCGGCUag -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 12631 | 0.69 | 0.520413 |
Target: 5'- -aAAGCGACCG-CGccAGccgccaguGCGCCGAUCg -3' miRNA: 3'- ccUUCGCUGGCuGCu-UC--------UGCGGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 12541 | 0.74 | 0.267356 |
Target: 5'- cGGcGGCGGCCGGCGcu-GCGgCGAUCg -3' miRNA: 3'- -CCuUCGCUGGCUGCuucUGCgGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 12334 | 0.7 | 0.488383 |
Target: 5'- ----aCGGCUGcCGgcGGCGCCGAUCg -3' miRNA: 3'- ccuucGCUGGCuGCuuCUGCGGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 12059 | 0.69 | 0.520413 |
Target: 5'- aGGAgAGCcGCUGGCGcgcGGACGCCG-UCa -3' miRNA: 3'- -CCU-UCGcUGGCUGCu--UCUGCGGCuAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 11988 | 0.66 | 0.731987 |
Target: 5'- ---cGCGGCCacgggcGCGgcGGCGCCGAg- -3' miRNA: 3'- ccuuCGCUGGc-----UGCuuCUGCGGCUag -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 11006 | 0.68 | 0.586643 |
Target: 5'- cGGcuGaCGAUCGAggcCGAGGAacCGCCGGUCc -3' miRNA: 3'- -CCuuC-GCUGGCU---GCUUCU--GCGGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 10791 | 0.68 | 0.586643 |
Target: 5'- cGAGGCGAUCGAaGAAcgcGCGCCGGc- -3' miRNA: 3'- cCUUCGCUGGCUgCUUc--UGCGGCUag -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 8778 | 0.7 | 0.491545 |
Target: 5'- cGAAGCGaggucucGCCGAUGAccgggcugucgacguGGugGCCGAa- -3' miRNA: 3'- cCUUCGC-------UGGCUGCU---------------UCugCGGCUag -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 8160 | 0.66 | 0.699069 |
Target: 5'- cGucGCGGCCGGuCG-GGAUGUCGAUg -3' miRNA: 3'- cCuuCGCUGGCU-GCuUCUGCGGCUAg -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 6358 | 0.68 | 0.579924 |
Target: 5'- aGGAAGCcACCGugaccACGcAAcgcaaacgccgugucGACGCCGGUCa -3' miRNA: 3'- -CCUUCGcUGGC-----UGC-UU---------------CUGCGGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 5159 | 0.68 | 0.586643 |
Target: 5'- --cAGUGAUCGGCGAaagcuaccggcGGcACGCCGAUa -3' miRNA: 3'- ccuUCGCUGGCUGCU-----------UC-UGCGGCUAg -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 3942 | 0.71 | 0.397603 |
Target: 5'- ---cGUGAUCGACGAAGcgcacgcGCuGCCGAUCg -3' miRNA: 3'- ccuuCGCUGGCUGCUUC-------UG-CGGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 2169 | 0.69 | 0.553233 |
Target: 5'- ---uGCGACCGACaAGGAagGCCaGAUCa -3' miRNA: 3'- ccuuCGCUGGCUGcUUCUg-CGG-CUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 2162 | 0.69 | 0.506426 |
Target: 5'- cGggGCGugCGuccgucguccaaucGCGAAGGCacucGUCGAUCa -3' miRNA: 3'- cCuuCGCugGC--------------UGCUUCUG----CGGCUAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 1657 | 0.66 | 0.721103 |
Target: 5'- cGGcAAGgGGCUGA--AGGACGCCG-UCa -3' miRNA: 3'- -CC-UUCgCUGGCUgcUUCUGCGGCuAG- -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 695 | 0.68 | 0.597871 |
Target: 5'- -cGAGCuGGCCGACaucGGCGCCGAc- -3' miRNA: 3'- ccUUCG-CUGGCUGcuuCUGCGGCUag -5' |
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27652 | 5' | -53.9 | NC_005882.1 | + | 472 | 0.67 | 0.654275 |
Target: 5'- -aAGGCGGuCCGGCGcgagGAGAuCGCCGcUCg -3' miRNA: 3'- ccUUCGCU-GGCUGC----UUCU-GCGGCuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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