miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27652 5' -53.9 NC_005882.1 + 17301 0.69 0.520413
Target:  5'- uGAAGCuGCCGcCGAAGAaGgCGAUCg -3'
miRNA:   3'- cCUUCGcUGGCuGCUUCUgCgGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 31972 0.71 0.437194
Target:  5'- --cGGCGGCCGcugaccgauuACGucGACGuCCGAUCg -3'
miRNA:   3'- ccuUCGCUGGC----------UGCuuCUGC-GGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 12334 0.7 0.488383
Target:  5'- ----aCGGCUGcCGgcGGCGCCGAUCg -3'
miRNA:   3'- ccuucGCUGGCuGCuuCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 29867 0.7 0.488383
Target:  5'- cGAAGCuGGCCGcCGGu-GCGUCGAUCg -3'
miRNA:   3'- cCUUCG-CUGGCuGCUucUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 8778 0.7 0.491545
Target:  5'- cGAAGCGaggucucGCCGAUGAccgggcugucgacguGGugGCCGAa- -3'
miRNA:   3'- cCUUCGC-------UGGCUGCU---------------UCugCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 2162 0.69 0.506426
Target:  5'- cGggGCGugCGuccgucguccaaucGCGAAGGCacucGUCGAUCa -3'
miRNA:   3'- cCuuCGCugGC--------------UGCUUCUG----CGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 16962 0.69 0.50964
Target:  5'- aGGAuGCGACCugGACGAGcGGCcgcuGCCGGUg -3'
miRNA:   3'- -CCUuCGCUGG--CUGCUU-CUG----CGGCUAg -5'
27652 5' -53.9 NC_005882.1 + 31129 0.69 0.50964
Target:  5'- cGGAGGUG-CCG-CGAuGACGCuCGGUg -3'
miRNA:   3'- -CCUUCGCuGGCuGCUuCUGCG-GCUAg -5'
27652 5' -53.9 NC_005882.1 + 12059 0.69 0.520413
Target:  5'- aGGAgAGCcGCUGGCGcgcGGACGCCG-UCa -3'
miRNA:   3'- -CCU-UCGcUGGCUGCu--UCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 21423 0.71 0.437194
Target:  5'- --cGGCGcACCGGCGccGACGaCGAUCa -3'
miRNA:   3'- ccuUCGC-UGGCUGCuuCUGCgGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 28894 0.71 0.407999
Target:  5'- cGGucguuGCGGCCGACGAcguaGCCGAUg -3'
miRNA:   3'- -CCuu---CGCUGGCUGCUucugCGGCUAg -5'
27652 5' -53.9 NC_005882.1 + 15741 0.71 0.407047
Target:  5'- gGGAccGGUGACCGccaagucGCGgcGGCGCCGcUCc -3'
miRNA:   3'- -CCU--UCGCUGGC-------UGCuuCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 26140 0.8 0.113183
Target:  5'- cGAAGuCGGCCG-CGAAGGCGCCGGc- -3'
miRNA:   3'- cCUUC-GCUGGCuGCUUCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 20484 0.77 0.16857
Target:  5'- aGGAAGCGAuCCGcACGAAGAucggcCGCCGGc- -3'
miRNA:   3'- -CCUUCGCU-GGC-UGCUUCU-----GCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 16805 0.77 0.16857
Target:  5'- uGGAuuuGCGACCuGAacuuCGAcGGCGCCGAUCg -3'
miRNA:   3'- -CCUu--CGCUGG-CU----GCUuCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 12541 0.74 0.267356
Target:  5'- cGGcGGCGGCCGGCGcu-GCGgCGAUCg -3'
miRNA:   3'- -CCuUCGCUGGCUGCuucUGCgGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 14206 0.74 0.296536
Target:  5'- cGGAAGCGGCCGcCGcGGcCGUCGAc- -3'
miRNA:   3'- -CCUUCGCUGGCuGCuUCuGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 15262 0.73 0.320005
Target:  5'- cGGAcuGGCGACCuGACGGuccacguGcCGCUGAUCg -3'
miRNA:   3'- -CCU--UCGCUGG-CUGCUu------CuGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 17878 0.72 0.360392
Target:  5'- cGAGGCGGCCGGCGAccgccucggcacGACGCUcaagcuGGUCa -3'
miRNA:   3'- cCUUCGCUGGCUGCUu-----------CUGCGG------CUAG- -5'
27652 5' -53.9 NC_005882.1 + 23180 0.72 0.380054
Target:  5'- cGggGCGAUCGcguacauCGAu-GCGCCGAUCg -3'
miRNA:   3'- cCuuCGCUGGCu------GCUucUGCGGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.