miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27652 5' -53.9 NC_005882.1 + 25707 0.75 0.253657
Target:  5'- cGGgcGCGGCCGugGcAGcCGCCG-UCg -3'
miRNA:   3'- -CCuuCGCUGGCugCuUCuGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 695 0.68 0.597871
Target:  5'- -cGAGCuGGCCGACaucGGCGCCGAc- -3'
miRNA:   3'- ccUUCG-CUGGCUGcuuCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 27083 0.67 0.631702
Target:  5'- gGGAGcagcgcGCGGCCaacGACGAGcGCGCCGcgCc -3'
miRNA:   3'- -CCUU------CGCUGG---CUGCUUcUGCGGCuaG- -5'
27652 5' -53.9 NC_005882.1 + 21967 0.66 0.731987
Target:  5'- cGGAuAGCuGACCaGC-AAcGCGCCGAUCg -3'
miRNA:   3'- -CCU-UCG-CUGGcUGcUUcUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 3942 0.71 0.397603
Target:  5'- ---cGUGAUCGACGAAGcgcacgcGCuGCCGAUCg -3'
miRNA:   3'- ccuuCGCUGGCUGCUUC-------UG-CGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 29248 0.71 0.407999
Target:  5'- cGAAGCGGCCGcacGCGAGcaacggcgcgccGGCguaGCCGAUCu -3'
miRNA:   3'- cCUUCGCUGGC---UGCUU------------CUG---CGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 30434 0.69 0.520413
Target:  5'- cGGGcgGGCGAUCGGCaucggaguaGAuGGCGCCGAg- -3'
miRNA:   3'- -CCU--UCGCUGGCUG---------CUuCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 19482 0.69 0.520413
Target:  5'- ---cGCGuuCGGCGAAuGCGCUGGUCg -3'
miRNA:   3'- ccuuCGCugGCUGCUUcUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 32023 0.69 0.553233
Target:  5'- cGGucAGCGGCCGcCGAcgcuCGUCGGUCa -3'
miRNA:   3'- -CCu-UCGCUGGCuGCUucu-GCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 10791 0.68 0.586643
Target:  5'- cGAGGCGAUCGAaGAAcgcGCGCCGGc- -3'
miRNA:   3'- cCUUCGCUGGCUgCUUc--UGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 6358 0.68 0.579924
Target:  5'- aGGAAGCcACCGugaccACGcAAcgcaaacgccgugucGACGCCGGUCa -3'
miRNA:   3'- -CCUUCGcUGGC-----UGC-UU---------------CUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 2169 0.69 0.553233
Target:  5'- ---uGCGACCGACaAGGAagGCCaGAUCa -3'
miRNA:   3'- ccuuCGCUGGCUGcUUCUg-CGG-CUAG- -5'
27652 5' -53.9 NC_005882.1 + 25110 0.74 0.274427
Target:  5'- uGGcuuuGCGGCCGGCucGGGCGCCGGg- -3'
miRNA:   3'- -CCuu--CGCUGGCUGcuUCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 31706 0.68 0.586643
Target:  5'- uGGuguuAGCGACCGucACGucGACGUCGcccagGUCg -3'
miRNA:   3'- -CCu---UCGCUGGC--UGCuuCUGCGGC-----UAG- -5'
27652 5' -53.9 NC_005882.1 + 27616 0.72 0.362149
Target:  5'- --cGGCGaccGCCGACGAGcgcccGAUGCCGAUUg -3'
miRNA:   3'- ccuUCGC---UGGCUGCUU-----CUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 12631 0.69 0.520413
Target:  5'- -aAAGCGACCG-CGccAGccgccaguGCGCCGAUCg -3'
miRNA:   3'- ccUUCGCUGGCuGCu-UC--------UGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 5159 0.68 0.586643
Target:  5'- --cAGUGAUCGGCGAaagcuaccggcGGcACGCCGAUa -3'
miRNA:   3'- ccuUCGCUGGCUGCU-----------UC-UGCGGCUAg -5'
27652 5' -53.9 NC_005882.1 + 29015 0.68 0.597871
Target:  5'- gGGAcgucGGCaACCGACGucgGGGUGUCGAUCa -3'
miRNA:   3'- -CCU----UCGcUGGCUGCu--UCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 12663 0.72 0.371028
Target:  5'- cGGcAAGCGcACCGGCGugauAGcCGCCGAa- -3'
miRNA:   3'- -CC-UUCGC-UGGCUGCu---UCuGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 25737 0.69 0.498961
Target:  5'- aGGuGGCGGCCuGcCGAAcaGCGCCGAUUa -3'
miRNA:   3'- -CCuUCGCUGG-CuGCUUc-UGCGGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.