miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27652 5' -53.9 NC_005882.1 + 29015 0.68 0.597871
Target:  5'- gGGAcgucGGCaACCGACGucgGGGUGUCGAUCa -3'
miRNA:   3'- -CCU----UCGcUGGCUGCu--UCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 32056 0.66 0.699069
Target:  5'- cGAccGGCG-UCGGCGAucGGACGUCGAc- -3'
miRNA:   3'- cCU--UCGCuGGCUGCU--UCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 695 0.68 0.597871
Target:  5'- -cGAGCuGGCCGACaucGGCGCCGAc- -3'
miRNA:   3'- ccUUCG-CUGGCUGcuuCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 27616 0.72 0.362149
Target:  5'- --cGGCGaccGCCGACGAGcgcccGAUGCCGAUUg -3'
miRNA:   3'- ccuUCGC---UGGCUGCUU-----CUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 21103 0.66 0.676761
Target:  5'- uGGAAGCGguucagGCCGGCGGcagcgguaacGGACGUgguaagGAUCg -3'
miRNA:   3'- -CCUUCGC------UGGCUGCU----------UCUGCGg-----CUAG- -5'
27652 5' -53.9 NC_005882.1 + 17327 0.67 0.654275
Target:  5'- cGAGGuCGACCGcuucaggcAUGGAGACGCCc--- -3'
miRNA:   3'- cCUUC-GCUGGC--------UGCUUCUGCGGcuag -5'
27652 5' -53.9 NC_005882.1 + 26764 0.66 0.720009
Target:  5'- gGGAugGGCGGCCG-CGAacugcgcGGuGCGCUgGAUCa -3'
miRNA:   3'- -CCU--UCGCUGGCuGCU-------UC-UGCGG-CUAG- -5'
27652 5' -53.9 NC_005882.1 + 21967 0.66 0.731987
Target:  5'- cGGAuAGCuGACCaGC-AAcGCGCCGAUCg -3'
miRNA:   3'- -CCU-UCG-CUGGcUGcUUcUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 25110 0.74 0.274427
Target:  5'- uGGcuuuGCGGCCGGCucGGGCGCCGGg- -3'
miRNA:   3'- -CCuu--CGCUGGCUGcuUCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 25707 0.75 0.253657
Target:  5'- cGGgcGCGGCCGugGcAGcCGCCG-UCg -3'
miRNA:   3'- -CCuuCGCUGGCugCuUCuGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 3942 0.71 0.397603
Target:  5'- ---cGUGAUCGACGAAGcgcacgcGCuGCCGAUCg -3'
miRNA:   3'- ccuuCGCUGGCUGCUUC-------UG-CGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 12663 0.72 0.371028
Target:  5'- cGGcAAGCGcACCGGCGugauAGcCGCCGAa- -3'
miRNA:   3'- -CC-UUCGC-UGGCUGCu---UCuGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 15262 0.73 0.320005
Target:  5'- cGGAcuGGCGACCuGACGGuccacguGcCGCUGAUCg -3'
miRNA:   3'- -CCU--UCGCUGG-CUGCUu------CuGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 28034 0.68 0.586643
Target:  5'- cGGAAGCcgaGCUGGCGAAGcuGCGCgCGGc- -3'
miRNA:   3'- -CCUUCGc--UGGCUGCUUC--UGCG-GCUag -5'
27652 5' -53.9 NC_005882.1 + 11006 0.68 0.586643
Target:  5'- cGGcuGaCGAUCGAggcCGAGGAacCGCCGGUCc -3'
miRNA:   3'- -CCuuC-GCUGGCU---GCUUCU--GCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 17037 0.68 0.575454
Target:  5'- cGAAGCGcCCGACcAGGACGCgcuCGAc- -3'
miRNA:   3'- cCUUCGCuGGCUGcUUCUGCG---GCUag -5'
27652 5' -53.9 NC_005882.1 + 19244 0.68 0.564314
Target:  5'- --cAGCGACgGcaACGAAGGCGUCG-UCg -3'
miRNA:   3'- ccuUCGCUGgC--UGCUUCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 30242 0.69 0.553232
Target:  5'- aGGAccauguGGCuGCCGAucgcguaccCGAAGACccugGCCGAUCa -3'
miRNA:   3'- -CCU------UCGcUGGCU---------GCUUCUG----CGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 12334 0.7 0.488383
Target:  5'- ----aCGGCUGcCGgcGGCGCCGAUCg -3'
miRNA:   3'- ccuucGCUGGCuGCuuCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 29867 0.7 0.488383
Target:  5'- cGAAGCuGGCCGcCGGu-GCGUCGAUCg -3'
miRNA:   3'- cCUUCG-CUGGCuGCUucUGCGGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.