miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27652 5' -53.9 NC_005882.1 + 14206 0.74 0.296536
Target:  5'- cGGAAGCGGCCGcCGcGGcCGUCGAc- -3'
miRNA:   3'- -CCUUCGCUGGCuGCuUCuGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 20484 0.77 0.16857
Target:  5'- aGGAAGCGAuCCGcACGAAGAucggcCGCCGGc- -3'
miRNA:   3'- -CCUUCGCU-GGC-UGCUUCU-----GCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 33433 0.66 0.728732
Target:  5'- cGGuGGCuggcguuccuaaugGugCGACGAucacaaucGGAgCGCCGGUCa -3'
miRNA:   3'- -CCuUCG--------------CugGCUGCU--------UCU-GCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 26574 0.66 0.721103
Target:  5'- cGGAgcuGGCGACCGuCGcguGGgGCCGcuuUCa -3'
miRNA:   3'- -CCU---UCGCUGGCuGCuu-CUgCGGCu--AG- -5'
27652 5' -53.9 NC_005882.1 + 16130 0.69 0.531274
Target:  5'- cGGAucGUGACCGA-GAugcuGGACGCCG-UCc -3'
miRNA:   3'- -CCUu-CGCUGGCUgCU----UCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 17301 0.69 0.520413
Target:  5'- uGAAGCuGCCGcCGAAGAaGgCGAUCg -3'
miRNA:   3'- cCUUCGcUGGCuGCUUCUgCgGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 17089 0.69 0.553232
Target:  5'- ---cGCGaccugaauGCCGACGcgcAGGCGCUGGUCg -3'
miRNA:   3'- ccuuCGC--------UGGCUGCu--UCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 30242 0.69 0.553232
Target:  5'- aGGAccauguGGCuGCCGAucgcguaccCGAAGACccugGCCGAUCa -3'
miRNA:   3'- -CCU------UCGcUGGCU---------GCUUCUG----CGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 19244 0.68 0.564314
Target:  5'- --cAGCGACgGcaACGAAGGCGUCG-UCg -3'
miRNA:   3'- ccuUCGCUGgC--UGCUUCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 17037 0.68 0.575454
Target:  5'- cGAAGCGcCCGACcAGGACGCgcuCGAc- -3'
miRNA:   3'- cCUUCGCuGGCUGcUUCUGCG---GCUag -5'
27652 5' -53.9 NC_005882.1 + 11006 0.68 0.586643
Target:  5'- cGGcuGaCGAUCGAggcCGAGGAacCGCCGGUCc -3'
miRNA:   3'- -CCuuC-GCUGGCU---GCUUCU--GCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 28034 0.68 0.586643
Target:  5'- cGGAAGCcgaGCUGGCGAAGcuGCGCgCGGc- -3'
miRNA:   3'- -CCUUCGc--UGGCUGCUUC--UGCG-GCUag -5'
27652 5' -53.9 NC_005882.1 + 12059 0.69 0.520413
Target:  5'- aGGAgAGCcGCUGGCGcgcGGACGCCG-UCa -3'
miRNA:   3'- -CCU-UCGcUGGCUGCu--UCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 29867 0.7 0.488383
Target:  5'- cGAAGCuGGCCGcCGGu-GCGUCGAUCg -3'
miRNA:   3'- cCUUCG-CUGGCuGCUucUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 12334 0.7 0.488383
Target:  5'- ----aCGGCUGcCGgcGGCGCCGAUCg -3'
miRNA:   3'- ccuucGCUGGCuGCuuCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 16593 0.69 0.541119
Target:  5'- aGGAAGCaGCCGGC-AAGaccgguaGCGCCGAc- -3'
miRNA:   3'- -CCUUCGcUGGCUGcUUC-------UGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 31972 0.71 0.437194
Target:  5'- --cGGCGGCCGcugaccgauuACGucGACGuCCGAUCg -3'
miRNA:   3'- ccuUCGCUGGC----------UGCuuCUGC-GGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 32978 0.66 0.710127
Target:  5'- --cGGCGGCCGcACgcgcuaccuGAAGGCGCaGGUCg -3'
miRNA:   3'- ccuUCGCUGGC-UG---------CUUCUGCGgCUAG- -5'
27652 5' -53.9 NC_005882.1 + 35377 0.66 0.721103
Target:  5'- cGGAGGCGcuuCUGGC--AGGCcuaccggaGCCGAUCg -3'
miRNA:   3'- -CCUUCGCu--GGCUGcuUCUG--------CGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 22170 0.66 0.721103
Target:  5'- cGGcGGGCG-CCGugauuguCGAAGACGCgGAg- -3'
miRNA:   3'- -CC-UUCGCuGGCu------GCUUCUGCGgCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.