miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27652 5' -53.9 NC_005882.1 + 17301 0.69 0.520413
Target:  5'- uGAAGCuGCCGcCGAAGAaGgCGAUCg -3'
miRNA:   3'- cCUUCGcUGGCuGCUUCUgCgGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 19808 0.69 0.531274
Target:  5'- -cGAGCGcGCCGGCGugacgacgacGGGCGCCGAc- -3'
miRNA:   3'- ccUUCGC-UGGCUGCu---------UCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 32978 0.66 0.710127
Target:  5'- --cGGCGGCCGcACgcgcuaccuGAAGGCGCaGGUCg -3'
miRNA:   3'- ccuUCGCUGGC-UG---------CUUCUGCGgCUAG- -5'
27652 5' -53.9 NC_005882.1 + 12727 0.66 0.699069
Target:  5'- cGGcGGCGcucGCCGGCGAccuguuCGCCGAg- -3'
miRNA:   3'- -CCuUCGC---UGGCUGCUucu---GCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 8160 0.66 0.699069
Target:  5'- cGucGCGGCCGGuCG-GGAUGUCGAUg -3'
miRNA:   3'- cCuuCGCUGGCU-GCuUCUGCGGCUAg -5'
27652 5' -53.9 NC_005882.1 + 21125 0.67 0.642994
Target:  5'- cGAAaCGACCGccgaugucgGCGAGcaaGCGCCGGUCa -3'
miRNA:   3'- cCUUcGCUGGC---------UGCUUc--UGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 22310 0.67 0.642994
Target:  5'- aGGAAGUGAugcuucauaCgGGCGcAGACGUCGAg- -3'
miRNA:   3'- -CCUUCGCU---------GgCUGCuUCUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 13964 0.67 0.620411
Target:  5'- cGGAAGcCGACgcauccUGAcCGAAGGCGCagcggaCGAUCa -3'
miRNA:   3'- -CCUUC-GCUG------GCU-GCUUCUGCG------GCUAG- -5'
27652 5' -53.9 NC_005882.1 + 31213 0.67 0.620411
Target:  5'- cGAGGCGcgcACUGGC-AAGACGCUGuAUCc -3'
miRNA:   3'- cCUUCGC---UGGCUGcUUCUGCGGC-UAG- -5'
27652 5' -53.9 NC_005882.1 + 28938 0.67 0.620411
Target:  5'- uGGAucGGUGAUCGACaccccGACGUCGGUUg -3'
miRNA:   3'- -CCU--UCGCUGGCUGcuu--CUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 22868 0.67 0.620411
Target:  5'- -cGGGCGGCaCGACGu--ACGCCGAa- -3'
miRNA:   3'- ccUUCGCUG-GCUGCuucUGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 28034 0.68 0.586643
Target:  5'- cGGAAGCcgaGCUGGCGAAGcuGCGCgCGGc- -3'
miRNA:   3'- -CCUUCGc--UGGCUGCUUC--UGCG-GCUag -5'
27652 5' -53.9 NC_005882.1 + 11006 0.68 0.586643
Target:  5'- cGGcuGaCGAUCGAggcCGAGGAacCGCCGGUCc -3'
miRNA:   3'- -CCuuC-GCUGGCU---GCUUCU--GCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 17037 0.68 0.575454
Target:  5'- cGAAGCGcCCGACcAGGACGCgcuCGAc- -3'
miRNA:   3'- cCUUCGCuGGCUGcUUCUGCG---GCUag -5'
27652 5' -53.9 NC_005882.1 + 19244 0.68 0.564314
Target:  5'- --cAGCGACgGcaACGAAGGCGUCG-UCg -3'
miRNA:   3'- ccuUCGCUGgC--UGCUUCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 30242 0.69 0.553232
Target:  5'- aGGAccauguGGCuGCCGAucgcguaccCGAAGACccugGCCGAUCa -3'
miRNA:   3'- -CCU------UCGcUGGCU---------GCUUCUG----CGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 17089 0.69 0.553232
Target:  5'- ---cGCGaccugaauGCCGACGcgcAGGCGCUGGUCg -3'
miRNA:   3'- ccuuCGC--------UGGCUGCu--UCUGCGGCUAG- -5'
27652 5' -53.9 NC_005882.1 + 16593 0.69 0.541119
Target:  5'- aGGAAGCaGCCGGC-AAGaccgguaGCGCCGAc- -3'
miRNA:   3'- -CCUUCGcUGGCUGcUUC-------UGCGGCUag -5'
27652 5' -53.9 NC_005882.1 + 16130 0.69 0.531274
Target:  5'- cGGAucGUGACCGA-GAugcuGGACGCCG-UCc -3'
miRNA:   3'- -CCUu-CGCUGGCUgCU----UCUGCGGCuAG- -5'
27652 5' -53.9 NC_005882.1 + 14074 1.11 0.000691
Target:  5'- aGGAAGCGACCGACGAAGACGCCGAUCc -3'
miRNA:   3'- -CCUUCGCUGGCUGCUUCUGCGGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.