miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27657 5' -58.8 NC_005882.1 + 29848 0.66 0.377786
Target:  5'- gUCGAgaUGCGGGGCGACacgaagcuGGCCGc-- -3'
miRNA:   3'- aAGCUgcGCGCCCCGUUG--------CCGGUuau -5'
27657 5' -58.8 NC_005882.1 + 8207 0.66 0.368822
Target:  5'- -cCGGC-CGCGacGCGACGGCCGAa- -3'
miRNA:   3'- aaGCUGcGCGCccCGUUGCCGGUUau -5'
27657 5' -58.8 NC_005882.1 + 26935 0.66 0.368822
Target:  5'- uUUCGGCauggggcggGCGCGGccGGCAaguucGCGGCCGu-- -3'
miRNA:   3'- -AAGCUG---------CGCGCC--CCGU-----UGCCGGUuau -5'
27657 5' -58.8 NC_005882.1 + 12522 0.66 0.368822
Target:  5'- ----uCGCGCGGccagugugucgcGGCGGCGGCCGGc- -3'
miRNA:   3'- aagcuGCGCGCC------------CCGUUGCCGGUUau -5'
27657 5' -58.8 NC_005882.1 + 18395 0.67 0.342816
Target:  5'- -gCGACGCGaCGcGGCcGCGGUCAGc- -3'
miRNA:   3'- aaGCUGCGC-GCcCCGuUGCCGGUUau -5'
27657 5' -58.8 NC_005882.1 + 29125 0.67 0.326226
Target:  5'- cUCGAUGCGUGGuauccgggcaaaGGCGACGcGCUGAc- -3'
miRNA:   3'- aAGCUGCGCGCC------------CCGUUGC-CGGUUau -5'
27657 5' -58.8 NC_005882.1 + 3985 0.67 0.326226
Target:  5'- cUUGACcucuccaGCGGGGCcacGGCGGCCAu-- -3'
miRNA:   3'- aAGCUGcg-----CGCCCCG---UUGCCGGUuau -5'
27657 5' -58.8 NC_005882.1 + 28367 0.68 0.272908
Target:  5'- aUCGugccuCGCGCGGuGGCcACcGCCGAUGu -3'
miRNA:   3'- aAGCu----GCGCGCC-CCGuUGcCGGUUAU- -5'
27657 5' -58.8 NC_005882.1 + 13088 0.68 0.265888
Target:  5'- aUUCGAUGuCGCGGcuGCGGCGGCUGGc- -3'
miRNA:   3'- -AAGCUGC-GCGCCc-CGUUGCCGGUUau -5'
27657 5' -58.8 NC_005882.1 + 3385 0.69 0.252289
Target:  5'- -aCGcuuGCGCGCGGGcGCugcGCGGCCu--- -3'
miRNA:   3'- aaGC---UGCGCGCCC-CGu--UGCCGGuuau -5'
27657 5' -58.8 NC_005882.1 + 3330 0.69 0.245706
Target:  5'- cUCGcCGCGCGacGGCGGCcGGCCGAc- -3'
miRNA:   3'- aAGCuGCGCGCc-CCGUUG-CCGGUUau -5'
27657 5' -58.8 NC_005882.1 + 10674 0.69 0.232969
Target:  5'- gUCGGCaGCgGCGGaGGCGGCGGCa---- -3'
miRNA:   3'- aAGCUG-CG-CGCC-CCGUUGCCGguuau -5'
27657 5' -58.8 NC_005882.1 + 22469 0.69 0.226203
Target:  5'- --gGGCGCGCGGGcuuggucgacggcGCuGCGGCCGGc- -3'
miRNA:   3'- aagCUGCGCGCCC-------------CGuUGCCGGUUau -5'
27657 5' -58.8 NC_005882.1 + 2078 0.7 0.209162
Target:  5'- aUCGGCGCaGCGcGaGCAcGCGGCCGGUGu -3'
miRNA:   3'- aAGCUGCG-CGCcC-CGU-UGCCGGUUAU- -5'
27657 5' -58.8 NC_005882.1 + 4885 0.72 0.141759
Target:  5'- gUUCGACGCGCGGcGCAACgaGGUCGu-- -3'
miRNA:   3'- -AAGCUGCGCGCCcCGUUG--CCGGUuau -5'
27657 5' -58.8 NC_005882.1 + 25890 0.73 0.112783
Target:  5'- cUCGG-GCGCGuGGCGACGGCCAcgAa -3'
miRNA:   3'- aAGCUgCGCGCcCCGUUGCCGGUuaU- -5'
27657 5' -58.8 NC_005882.1 + 15420 1.04 0.000531
Target:  5'- cUUCGACGCGCGGGGCAACGGCCAAUAc -3'
miRNA:   3'- -AAGCUGCGCGCCCCGUUGCCGGUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.