miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2766 5' -51.1 NC_001491.2 + 60591 0.66 0.994102
Target:  5'- uGGGUCCGUGAGCCucugcaGGAGCGGC-GCa- -3'
miRNA:   3'- -CCUGGGUACUUGG------CUUUGCUGuCGac -5'
2766 5' -51.1 NC_001491.2 + 115464 0.66 0.992043
Target:  5'- cGGcCCCccGGcCCGGGACGGCgcgcgcuucggggAGCUGg -3'
miRNA:   3'- -CCuGGGuaCUuGGCUUUGCUG-------------UCGAC- -5'
2766 5' -51.1 NC_001491.2 + 111072 0.66 0.991002
Target:  5'- gGGACaCCGaaccuGCCGAuguuAGCGGCAGcCUGa -3'
miRNA:   3'- -CCUG-GGUacu--UGGCU----UUGCUGUC-GAC- -5'
2766 5' -51.1 NC_001491.2 + 66868 0.66 0.991002
Target:  5'- aGGGCUgucUGAGCaGGAGCGGCuGCUGu -3'
miRNA:   3'- -CCUGGgu-ACUUGgCUUUGCUGuCGAC- -5'
2766 5' -51.1 NC_001491.2 + 146139 0.67 0.986742
Target:  5'- aGGACCCGUGuccGCgCGGAGCGugGa--- -3'
miRNA:   3'- -CCUGGGUACu--UG-GCUUUGCugUcgac -5'
2766 5' -51.1 NC_001491.2 + 137693 0.67 0.986742
Target:  5'- cGGcGgCCGUGGACCGAGcgggcGCGGgAGCg- -3'
miRNA:   3'- -CC-UgGGUACUUGGCUU-----UGCUgUCGac -5'
2766 5' -51.1 NC_001491.2 + 147707 0.67 0.986243
Target:  5'- aGGGCCUggGGAUCGAAggugagcgccggGCGccaggccucggggaACAGCUGg -3'
miRNA:   3'- -CCUGGGuaCUUGGCUU------------UGC--------------UGUCGAC- -5'
2766 5' -51.1 NC_001491.2 + 138023 0.67 0.981078
Target:  5'- aGACCUcgGuGCCGGcggUGGCGGCUGu -3'
miRNA:   3'- cCUGGGuaCuUGGCUuu-GCUGUCGAC- -5'
2766 5' -51.1 NC_001491.2 + 145383 0.68 0.978837
Target:  5'- gGGAagCGgc-GCCGGAGCGGCAGCUc -3'
miRNA:   3'- -CCUggGUacuUGGCUUUGCUGUCGAc -5'
2766 5' -51.1 NC_001491.2 + 149267 0.68 0.967885
Target:  5'- uGGGCagacaUGUGAGCaauaaGGAACGugGGCUGc -3'
miRNA:   3'- -CCUGg----GUACUUGg----CUUUGCugUCGAC- -5'
2766 5' -51.1 NC_001491.2 + 38723 0.69 0.964613
Target:  5'- ---gUCGUGGGCCGcauGAACGGCAGCUu -3'
miRNA:   3'- ccugGGUACUUGGC---UUUGCUGUCGAc -5'
2766 5' -51.1 NC_001491.2 + 115683 0.69 0.949205
Target:  5'- gGGACCCAUGccAGCCGAGGgcccCGACcgucggGGCg- -3'
miRNA:   3'- -CCUGGGUAC--UUGGCUUU----GCUG------UCGac -5'
2766 5' -51.1 NC_001491.2 + 142462 0.69 0.949205
Target:  5'- cGGugCCAUGcgcgcucCCGAGACGGgGGgUGg -3'
miRNA:   3'- -CCugGGUACuu-----GGCUUUGCUgUCgAC- -5'
2766 5' -51.1 NC_001491.2 + 50104 0.7 0.94475
Target:  5'- cGGcCCCGUGGccguguCCGGAACGGCGuCUGc -3'
miRNA:   3'- -CCuGGGUACUu-----GGCUUUGCUGUcGAC- -5'
2766 5' -51.1 NC_001491.2 + 46823 0.7 0.934582
Target:  5'- aGACUCGUGGACCGAAAguaccgcCGACuuAGCa- -3'
miRNA:   3'- cCUGGGUACUUGGCUUU-------GCUG--UCGac -5'
2766 5' -51.1 NC_001491.2 + 117497 0.71 0.903975
Target:  5'- gGGACUugcuggaCAUGAacucaucccaggcuACCGggGCGGCGGCa- -3'
miRNA:   3'- -CCUGG-------GUACU--------------UGGCuuUGCUGUCGac -5'
2766 5' -51.1 NC_001491.2 + 1246 0.71 0.892672
Target:  5'- cGGGCCCGUGAaaaaaauuuuucgGCCuc-GCGACGGCc- -3'
miRNA:   3'- -CCUGGGUACU-------------UGGcuuUGCUGUCGac -5'
2766 5' -51.1 NC_001491.2 + 145419 0.72 0.879214
Target:  5'- cGGGCgCCGaagcugGAGCCGGAGCGGguGCg- -3'
miRNA:   3'- -CCUG-GGUa-----CUUGGCUUUGCUguCGac -5'
2766 5' -51.1 NC_001491.2 + 144911 0.72 0.85547
Target:  5'- -aGCCCcgGAGCCGGgcugggugccgggGACGcCGGCUGg -3'
miRNA:   3'- ccUGGGuaCUUGGCU-------------UUGCuGUCGAC- -5'
2766 5' -51.1 NC_001491.2 + 106263 0.73 0.831396
Target:  5'- cGACCCAcacGCCGggGCGgguggcgacggACAGCUGg -3'
miRNA:   3'- cCUGGGUacuUGGCuuUGC-----------UGUCGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.