Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2766 | 5' | -51.1 | NC_001491.2 | + | 1246 | 0.71 | 0.892672 |
Target: 5'- cGGGCCCGUGAaaaaaauuuuucgGCCuc-GCGACGGCc- -3' miRNA: 3'- -CCUGGGUACU-------------UGGcuuUGCUGUCGac -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 38723 | 0.69 | 0.964613 |
Target: 5'- ---gUCGUGGGCCGcauGAACGGCAGCUu -3' miRNA: 3'- ccugGGUACUUGGC---UUUGCUGUCGAc -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 46823 | 0.7 | 0.934582 |
Target: 5'- aGACUCGUGGACCGAAAguaccgcCGACuuAGCa- -3' miRNA: 3'- cCUGGGUACUUGGCUUU-------GCUG--UCGac -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 50104 | 0.7 | 0.94475 |
Target: 5'- cGGcCCCGUGGccguguCCGGAACGGCGuCUGc -3' miRNA: 3'- -CCuGGGUACUu-----GGCUUUGCUGUcGAC- -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 60591 | 0.66 | 0.994102 |
Target: 5'- uGGGUCCGUGAGCCucugcaGGAGCGGC-GCa- -3' miRNA: 3'- -CCUGGGUACUUGG------CUUUGCUGuCGac -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 66868 | 0.66 | 0.991002 |
Target: 5'- aGGGCUgucUGAGCaGGAGCGGCuGCUGu -3' miRNA: 3'- -CCUGGgu-ACUUGgCUUUGCUGuCGAC- -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 106263 | 0.73 | 0.831396 |
Target: 5'- cGACCCAcacGCCGggGCGgguggcgacggACAGCUGg -3' miRNA: 3'- cCUGGGUacuUGGCuuUGC-----------UGUCGAC- -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 111072 | 0.66 | 0.991002 |
Target: 5'- gGGACaCCGaaccuGCCGAuguuAGCGGCAGcCUGa -3' miRNA: 3'- -CCUG-GGUacu--UGGCU----UUGCUGUC-GAC- -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 115464 | 0.66 | 0.992043 |
Target: 5'- cGGcCCCccGGcCCGGGACGGCgcgcgcuucggggAGCUGg -3' miRNA: 3'- -CCuGGGuaCUuGGCUUUGCUG-------------UCGAC- -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 115683 | 0.69 | 0.949205 |
Target: 5'- gGGACCCAUGccAGCCGAGGgcccCGACcgucggGGCg- -3' miRNA: 3'- -CCUGGGUAC--UUGGCUUU----GCUG------UCGac -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 117497 | 0.71 | 0.903975 |
Target: 5'- gGGACUugcuggaCAUGAacucaucccaggcuACCGggGCGGCGGCa- -3' miRNA: 3'- -CCUGG-------GUACU--------------UGGCuuUGCUGUCGac -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 123557 | 0.76 | 0.69653 |
Target: 5'- cGGuCCgAUGGGCCGAG--GGCAGCUGg -3' miRNA: 3'- -CCuGGgUACUUGGCUUugCUGUCGAC- -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 137693 | 0.67 | 0.986742 |
Target: 5'- cGGcGgCCGUGGACCGAGcgggcGCGGgAGCg- -3' miRNA: 3'- -CC-UgGGUACUUGGCUU-----UGCUgUCGac -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 138023 | 0.67 | 0.981078 |
Target: 5'- aGACCUcgGuGCCGGcggUGGCGGCUGu -3' miRNA: 3'- cCUGGGuaCuUGGCUuu-GCUGUCGAC- -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 142462 | 0.69 | 0.949205 |
Target: 5'- cGGugCCAUGcgcgcucCCGAGACGGgGGgUGg -3' miRNA: 3'- -CCugGGUACuu-----GGCUUUGCUgUCgAC- -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 144911 | 0.72 | 0.85547 |
Target: 5'- -aGCCCcgGAGCCGGgcugggugccgggGACGcCGGCUGg -3' miRNA: 3'- ccUGGGuaCUUGGCU-------------UUGCuGUCGAC- -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 145383 | 0.68 | 0.978837 |
Target: 5'- gGGAagCGgc-GCCGGAGCGGCAGCUc -3' miRNA: 3'- -CCUggGUacuUGGCUUUGCUGUCGAc -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 145419 | 0.72 | 0.879214 |
Target: 5'- cGGGCgCCGaagcugGAGCCGGAGCGGguGCg- -3' miRNA: 3'- -CCUG-GGUa-----CUUGGCUUUGCUguCGac -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 146139 | 0.67 | 0.986742 |
Target: 5'- aGGACCCGUGuccGCgCGGAGCGugGa--- -3' miRNA: 3'- -CCUGGGUACu--UG-GCUUUGCugUcgac -5' |
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2766 | 5' | -51.1 | NC_001491.2 | + | 147707 | 0.67 | 0.986243 |
Target: 5'- aGGGCCUggGGAUCGAAggugagcgccggGCGccaggccucggggaACAGCUGg -3' miRNA: 3'- -CCUGGGuaCUUGGCUU------------UGC--------------UGUCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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