miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27660 5' -55.3 NC_005882.1 + 21174 0.66 0.6489
Target:  5'- cGGCGGucguuuCGGCAacgccgagcgccUUCGCGcCGGCuGCg -3'
miRNA:   3'- aCUGCCu-----GCUGU------------AAGCGCuGCCGcUG- -5'
27660 5' -55.3 NC_005882.1 + 3682 0.66 0.6489
Target:  5'- cGACGuGAuCGACGcaaGCGGCGuCGACg -3'
miRNA:   3'- aCUGC-CU-GCUGUaagCGCUGCcGCUG- -5'
27660 5' -55.3 NC_005882.1 + 12049 0.66 0.637685
Target:  5'- aGACGGcACGuGCGUUgCGCGucagcuCGGCG-Cg -3'
miRNA:   3'- aCUGCC-UGC-UGUAA-GCGCu-----GCCGCuG- -5'
27660 5' -55.3 NC_005882.1 + 26627 0.66 0.626464
Target:  5'- cGACGGuCGcCAgcucCGCG-CGGCGcACg -3'
miRNA:   3'- aCUGCCuGCuGUaa--GCGCuGCCGC-UG- -5'
27660 5' -55.3 NC_005882.1 + 32745 0.66 0.626463
Target:  5'- cGACGuuGGCuGCGUUCGCGcCGGCucGAUg -3'
miRNA:   3'- aCUGC--CUGcUGUAAGCGCuGCCG--CUG- -5'
27660 5' -55.3 NC_005882.1 + 12248 0.66 0.626463
Target:  5'- cGGCGGcCGguGCAUgcgaGCGcAUGGCGAUg -3'
miRNA:   3'- aCUGCCuGC--UGUAag--CGC-UGCCGCUG- -5'
27660 5' -55.3 NC_005882.1 + 9268 0.66 0.626463
Target:  5'- aGcCaGACGGCAUUCGgGGCgcuGGCGGa -3'
miRNA:   3'- aCuGcCUGCUGUAAGCgCUG---CCGCUg -5'
27660 5' -55.3 NC_005882.1 + 377 0.66 0.621976
Target:  5'- aGugGGGCucgcgaacaggucGCGUUgGCGAgCGGCGAUc -3'
miRNA:   3'- aCugCCUGc------------UGUAAgCGCU-GCCGCUG- -5'
27660 5' -55.3 NC_005882.1 + 25155 0.66 0.615248
Target:  5'- --gUGGcCGGCuccuaccucaUCGCGGCGGCGAUc -3'
miRNA:   3'- acuGCCuGCUGua--------AGCGCUGCCGCUG- -5'
27660 5' -55.3 NC_005882.1 + 11894 0.66 0.615248
Target:  5'- cGA-GGACGAUcacCGCG-CGGCGAa -3'
miRNA:   3'- aCUgCCUGCUGuaaGCGCuGCCGCUg -5'
27660 5' -55.3 NC_005882.1 + 3344 0.66 0.604047
Target:  5'- cUGGCcGAagaGAUcucgccgCGCGACGGCGGCc -3'
miRNA:   3'- -ACUGcCUg--CUGuaa----GCGCUGCCGCUG- -5'
27660 5' -55.3 NC_005882.1 + 3270 0.66 0.604047
Target:  5'- cGGCcGGCcGCcgUCGCG-CGGCGAg -3'
miRNA:   3'- aCUGcCUGcUGuaAGCGCuGCCGCUg -5'
27660 5' -55.3 NC_005882.1 + 11730 0.66 0.592872
Target:  5'- aGuACGcGACGACGgcCGCGA-GGCuGACg -3'
miRNA:   3'- aC-UGC-CUGCUGUaaGCGCUgCCG-CUG- -5'
27660 5' -55.3 NC_005882.1 + 1598 0.67 0.581731
Target:  5'- cGAUGGGCGuCGaccCGUG-CGGCGAUc -3'
miRNA:   3'- aCUGCCUGCuGUaa-GCGCuGCCGCUG- -5'
27660 5' -55.3 NC_005882.1 + 12573 0.67 0.58173
Target:  5'- cUGGCGGcUGGCGcggUCGCuuucuuCGGCGGCu -3'
miRNA:   3'- -ACUGCCuGCUGUa--AGCGcu----GCCGCUG- -5'
27660 5' -55.3 NC_005882.1 + 15742 0.67 0.570633
Target:  5'- gGAcCGG-UGACcgccaagUCGCGGCGGCGcCg -3'
miRNA:   3'- aCU-GCCuGCUGua-----AGCGCUGCCGCuG- -5'
27660 5' -55.3 NC_005882.1 + 7539 0.67 0.570633
Target:  5'- uUGGCGGuugcuGCGAC-UUCGUGcuCGGCGcACu -3'
miRNA:   3'- -ACUGCC-----UGCUGuAAGCGCu-GCCGC-UG- -5'
27660 5' -55.3 NC_005882.1 + 14278 0.67 0.559588
Target:  5'- uUGACGaccuuguCGACGgcCGCGGCGGCcGCu -3'
miRNA:   3'- -ACUGCcu-----GCUGUaaGCGCUGCCGcUG- -5'
27660 5' -55.3 NC_005882.1 + 12964 0.67 0.559588
Target:  5'- -cGCGGGC-ACAccaucggCGcCGGCGGCGGCg -3'
miRNA:   3'- acUGCCUGcUGUaa-----GC-GCUGCCGCUG- -5'
27660 5' -55.3 NC_005882.1 + 30532 0.67 0.548603
Target:  5'- -cGCGGcCGACAag-GUGACGGuCGACg -3'
miRNA:   3'- acUGCCuGCUGUaagCGCUGCC-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.