miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27662 5' -56.8 NC_005882.1 + 19096 0.66 0.510817
Target:  5'- uCGGC--CUGCA---GGUUGCCgGCCGAc -3'
miRNA:   3'- -GCCGauGACGUacuUCGACGG-CGGCU- -5'
27662 5' -56.8 NC_005882.1 + 16536 0.66 0.510817
Target:  5'- aGGacaUGgUGCAgGAuGCUGUCGCCGu -3'
miRNA:   3'- gCCg--AUgACGUaCUuCGACGGCGGCu -5'
27662 5' -56.8 NC_005882.1 + 27584 0.66 0.489463
Target:  5'- gCGGCgccCUGgGcGAuGUUGUCGCCGAa -3'
miRNA:   3'- -GCCGau-GACgUaCUuCGACGGCGGCU- -5'
27662 5' -56.8 NC_005882.1 + 31369 0.66 0.489463
Target:  5'- uGGCgaGCUggucgGCGUGAcGCgGCUGCCGGc -3'
miRNA:   3'- gCCGa-UGA-----CGUACUuCGaCGGCGGCU- -5'
27662 5' -56.8 NC_005882.1 + 12306 0.66 0.489463
Target:  5'- gGGCUGgguCUaucgcgaucagcGCGUGAcGGCUGCCGgCGGc -3'
miRNA:   3'- gCCGAU---GA------------CGUACU-UCGACGGCgGCU- -5'
27662 5' -56.8 NC_005882.1 + 14787 0.66 0.489463
Target:  5'- cCGaGCUGCU-CGUGGAacGCUGCCucGUCGAu -3'
miRNA:   3'- -GC-CGAUGAcGUACUU--CGACGG--CGGCU- -5'
27662 5' -56.8 NC_005882.1 + 21509 0.66 0.468536
Target:  5'- gCGGCcGCUaCAaccUGccGCUGUCGCCGGu -3'
miRNA:   3'- -GCCGaUGAcGU---ACuuCGACGGCGGCU- -5'
27662 5' -56.8 NC_005882.1 + 13078 0.66 0.468536
Target:  5'- gCGGCUGCgGC----GGCUGgCGUCGAc -3'
miRNA:   3'- -GCCGAUGaCGuacuUCGACgGCGGCU- -5'
27662 5' -56.8 NC_005882.1 + 2255 0.66 0.458246
Target:  5'- uGGCacGCUGgAUGcgguAGCgGCCGUCGAa -3'
miRNA:   3'- gCCGa-UGACgUACu---UCGaCGGCGGCU- -5'
27662 5' -56.8 NC_005882.1 + 12877 0.66 0.458246
Target:  5'- cCGGCUuuguCcGCGUGuggaacGCcGCCGCCGGc -3'
miRNA:   3'- -GCCGAu---GaCGUACuu----CGaCGGCGGCU- -5'
27662 5' -56.8 NC_005882.1 + 3960 0.67 0.432073
Target:  5'- gGGCUACcaGCAUugccucgugaucgacGAAGCgcacgcGCUGCCGAu -3'
miRNA:   3'- gCCGAUGa-CGUA---------------CUUCGa-----CGGCGGCU- -5'
27662 5' -56.8 NC_005882.1 + 5069 0.67 0.399204
Target:  5'- aGcGCaUGCUGCGcUGGcguaucGGCgUGCCGCCGGu -3'
miRNA:   3'- gC-CG-AUGACGU-ACU------UCG-ACGGCGGCU- -5'
27662 5' -56.8 NC_005882.1 + 30786 0.68 0.389845
Target:  5'- cCGGCUAaaaGCucaGUGGgagugguauucgAGUUGCCGCCGGc -3'
miRNA:   3'- -GCCGAUga-CG---UACU------------UCGACGGCGGCU- -5'
27662 5' -56.8 NC_005882.1 + 14197 0.68 0.389845
Target:  5'- aGGC-AC-GCGcgGAAGCgGCCGCCGc -3'
miRNA:   3'- gCCGaUGaCGUa-CUUCGaCGGCGGCu -5'
27662 5' -56.8 NC_005882.1 + 18540 0.69 0.328477
Target:  5'- aCGGCUgauggcgaGCUGCAaccUGAAGCgGUCgaGCCGGu -3'
miRNA:   3'- -GCCGA--------UGACGU---ACUUCGaCGG--CGGCU- -5'
27662 5' -56.8 NC_005882.1 + 29840 0.7 0.296748
Target:  5'- gCGGCUcggucgagauGCgggGCGacacGAAGCUgGCCGCCGGu -3'
miRNA:   3'- -GCCGA----------UGa--CGUa---CUUCGA-CGGCGGCU- -5'
27662 5' -56.8 NC_005882.1 + 4880 0.7 0.260501
Target:  5'- aGGCcGCUGUc-GAAGCUGCCGgCGu -3'
miRNA:   3'- gCCGaUGACGuaCUUCGACGGCgGCu -5'
27662 5' -56.8 NC_005882.1 + 24512 0.71 0.247045
Target:  5'- aCGaCUGCgcagGUGUGggGUUaGCCGCCGAu -3'
miRNA:   3'- -GCcGAUGa---CGUACuuCGA-CGGCGGCU- -5'
27662 5' -56.8 NC_005882.1 + 17808 0.71 0.23417
Target:  5'- aCGGCUgggGCUGCcggugccgcgugGUGgcGCUGUCGCaCGAc -3'
miRNA:   3'- -GCCGA---UGACG------------UACuuCGACGGCG-GCU- -5'
27662 5' -56.8 NC_005882.1 + 25585 0.72 0.221863
Target:  5'- gCGGCgccgcGCUGCGUGAgcaacgccaggGGCUcGgCGCCGAc -3'
miRNA:   3'- -GCCGa----UGACGUACU-----------UCGA-CgGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.