miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27663 3' -60.1 NC_005882.1 + 3680 0.66 0.327451
Target:  5'- cGG-AGGuauuCGUCCAGGCGcGGGCcgUc -3'
miRNA:   3'- aCCgUCCu---GCGGGUCCGCuUCCGuaA- -5'
27663 3' -60.1 NC_005882.1 + 4483 0.66 0.326638
Target:  5'- aGGUGGGugGCCCGaccgaugucuuGGCGGauacgacGGGCc-- -3'
miRNA:   3'- aCCGUCCugCGGGU-----------CCGCU-------UCCGuaa -5'
27663 3' -60.1 NC_005882.1 + 25526 0.66 0.303728
Target:  5'- cGGCcGGACaaucgaucagGUCCAGGCGAAG-CAa- -3'
miRNA:   3'- aCCGuCCUG----------CGGGUCCGCUUCcGUaa -5'
27663 3' -60.1 NC_005882.1 + 1618 0.66 0.288659
Target:  5'- cUGcGCGGcGACGCCCGauGCGAuGGGCGUc -3'
miRNA:   3'- -AC-CGUC-CUGCGGGUc-CGCU-UCCGUAa -5'
27663 3' -60.1 NC_005882.1 + 9275 0.67 0.281348
Target:  5'- cGGCauucGGGGCGCU--GGCGGAGGUg-- -3'
miRNA:   3'- aCCG----UCCUGCGGguCCGCUUCCGuaa -5'
27663 3' -60.1 NC_005882.1 + 12199 0.67 0.280625
Target:  5'- cGGCcGGauagGCGCCCGcgauccagucgacGGuCGAGGGCAUg -3'
miRNA:   3'- aCCGuCC----UGCGGGU-------------CC-GCUUCCGUAa -5'
27663 3' -60.1 NC_005882.1 + 30825 0.67 0.260298
Target:  5'- cUGGCAGccgGCCCuuaaccGCGAAGGCGUUg -3'
miRNA:   3'- -ACCGUCcugCGGGuc----CGCUUCCGUAA- -5'
27663 3' -60.1 NC_005882.1 + 135 0.67 0.260298
Target:  5'- aGGCccgcgAGGGcCGCgUCAGGcCGAAGGCAa- -3'
miRNA:   3'- aCCG-----UCCU-GCG-GGUCC-GCUUCCGUaa -5'
27663 3' -60.1 NC_005882.1 + 32193 0.68 0.240549
Target:  5'- cUGGCgcGGGACGauaucgcgcCCCAGGCcGgcGGCAc- -3'
miRNA:   3'- -ACCG--UCCUGC---------GGGUCCG-CuuCCGUaa -5'
27663 3' -60.1 NC_005882.1 + 28061 0.68 0.210426
Target:  5'- cGGCGGuGAgCGCaaaaCAGGCGAuGGCGc- -3'
miRNA:   3'- aCCGUC-CU-GCGg---GUCCGCUuCCGUaa -5'
27663 3' -60.1 NC_005882.1 + 21884 0.7 0.15116
Target:  5'- cUGGCAGcuuGACGCgcagCCGGGCGAcgauGGCAUc -3'
miRNA:   3'- -ACCGUC---CUGCG----GGUCCGCUu---CCGUAa -5'
27663 3' -60.1 NC_005882.1 + 7926 0.71 0.138915
Target:  5'- aUGGCcuGACGCCC-GGCGAacucaccaAGGCGa- -3'
miRNA:   3'- -ACCGucCUGCGGGuCCGCU--------UCCGUaa -5'
27663 3' -60.1 NC_005882.1 + 17475 0.72 0.120516
Target:  5'- -uGCAGGAUGUCCAGGCGcgugaccuuGGCAa- -3'
miRNA:   3'- acCGUCCUGCGGGUCCGCuu-------CCGUaa -5'
27663 3' -60.1 NC_005882.1 + 17377 1.04 0.000317
Target:  5'- uUGGCAGGACGCCCAGGCGAAGGCAUUu -3'
miRNA:   3'- -ACCGUCCUGCGGGUCCGCUUCCGUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.