miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27664 5' -60.3 NC_005882.1 + 23452 0.66 0.366893
Target:  5'- aGCGGCCGCUgUCGGCGaugauCGACGauccgCAAu -3'
miRNA:   3'- cCGCUGGCGG-AGCCGU-----GCUGCga---GUU- -5'
27664 5' -60.3 NC_005882.1 + 33084 0.66 0.366893
Target:  5'- cGGCGAUaugcugcgcaaGCC-CGGUcuGCGACuGCUCGAc -3'
miRNA:   3'- -CCGCUGg----------CGGaGCCG--UGCUG-CGAGUU- -5'
27664 5' -60.3 NC_005882.1 + 29245 0.66 0.358325
Target:  5'- aGCGGCCGCacgCGaGCaACGGCGCg--- -3'
miRNA:   3'- cCGCUGGCGga-GC-CG-UGCUGCGaguu -5'
27664 5' -60.3 NC_005882.1 + 28064 0.66 0.358325
Target:  5'- cGGUGAgCGCaaaacaGGCgAUGGCGCUCGu -3'
miRNA:   3'- -CCGCUgGCGgag---CCG-UGCUGCGAGUu -5'
27664 5' -60.3 NC_005882.1 + 22516 0.66 0.349062
Target:  5'- cGGCGACCGCguucgcggcggucUUCGGUugGucuuccggcACGCUgGGg -3'
miRNA:   3'- -CCGCUGGCG-------------GAGCCGugC---------UGCGAgUU- -5'
27664 5' -60.3 NC_005882.1 + 14210 0.66 0.341611
Target:  5'- aGCGGCCGCCgCGGCcguCGACaaGgUCGu -3'
miRNA:   3'- cCGCUGGCGGaGCCGu--GCUG--CgAGUu -5'
27664 5' -60.3 NC_005882.1 + 28580 0.66 0.341611
Target:  5'- -cCGGCCGCCUCGGgaauCugGuCGgUCAGg -3'
miRNA:   3'- ccGCUGGCGGAGCC----GugCuGCgAGUU- -5'
27664 5' -60.3 NC_005882.1 + 31844 0.66 0.333468
Target:  5'- cGCGACgGCCggcUGGUuuccgucaACGGCGUUCAGc -3'
miRNA:   3'- cCGCUGgCGGa--GCCG--------UGCUGCGAGUU- -5'
27664 5' -60.3 NC_005882.1 + 3270 0.66 0.333468
Target:  5'- cGGcCGGCCGCCgUC-GCGCGGCGagaUCu- -3'
miRNA:   3'- -CC-GCUGGCGG-AGcCGUGCUGCg--AGuu -5'
27664 5' -60.3 NC_005882.1 + 3924 0.66 0.325469
Target:  5'- cGCG-CUGCCgau-CGCGACGCUCAAg -3'
miRNA:   3'- cCGCuGGCGGagccGUGCUGCGAGUU- -5'
27664 5' -60.3 NC_005882.1 + 15415 0.66 0.325469
Target:  5'- aGGCGaucugcuccuGCUGCCggaaCGGCACGuugcgcaGCUCGAc -3'
miRNA:   3'- -CCGC----------UGGCGGa---GCCGUGCug-----CGAGUU- -5'
27664 5' -60.3 NC_005882.1 + 21693 0.66 0.317612
Target:  5'- cGGCGACCcgagCGGCccgGCGACGCcCGAg -3'
miRNA:   3'- -CCGCUGGcggaGCCG---UGCUGCGaGUU- -5'
27664 5' -60.3 NC_005882.1 + 12447 0.66 0.317612
Target:  5'- aGCGGCCGCgUgcCGGC-CGGCGUUgAAc -3'
miRNA:   3'- cCGCUGGCGgA--GCCGuGCUGCGAgUU- -5'
27664 5' -60.3 NC_005882.1 + 26713 0.66 0.316835
Target:  5'- cGCGGCCGCCcauccCGGCcugauccGCGGCGUggUCGg -3'
miRNA:   3'- cCGCUGGCGGa----GCCG-------UGCUGCG--AGUu -5'
27664 5' -60.3 NC_005882.1 + 27225 0.67 0.309899
Target:  5'- cGCGAUCGCggUCGGCGCGuAC-CUCAu -3'
miRNA:   3'- cCGCUGGCGg-AGCCGUGC-UGcGAGUu -5'
27664 5' -60.3 NC_005882.1 + 17933 0.67 0.308374
Target:  5'- aGGCGgucgccgGCCGCCUCGaccuugaugccucGCACGAUGauCUCGu -3'
miRNA:   3'- -CCGC-------UGGCGGAGC-------------CGUGCUGC--GAGUu -5'
27664 5' -60.3 NC_005882.1 + 13259 0.67 0.294904
Target:  5'- uGGUucuGAUCGCgCUCGGaCugGugGCGCUCGAu -3'
miRNA:   3'- -CCG---CUGGCG-GAGCC-GugC--UGCGAGUU- -5'
27664 5' -60.3 NC_005882.1 + 18969 0.67 0.287621
Target:  5'- cGGCGAgguCCGUUUCGGCgaaaucaagcacGCGACcGUUCAu -3'
miRNA:   3'- -CCGCU---GGCGGAGCCG------------UGCUG-CGAGUu -5'
27664 5' -60.3 NC_005882.1 + 10873 0.67 0.28048
Target:  5'- cGCGACCGCCUUG-UAUuGCuGCUCAAg -3'
miRNA:   3'- cCGCUGGCGGAGCcGUGcUG-CGAGUU- -5'
27664 5' -60.3 NC_005882.1 + 28317 0.67 0.28048
Target:  5'- cGCGGCCGCCggCGGCACcuuGgGCUg-- -3'
miRNA:   3'- cCGCUGGCGGa-GCCGUGc--UgCGAguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.