miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27665 3' -53.9 NC_005882.1 + 231 0.66 0.720973
Target:  5'- aCCGUUGACCacUGUCuccucGCGAGCCuugccuUCGg -3'
miRNA:   3'- -GGCGAUUGG--ACAGc----UGCUCGGcu----AGC- -5'
27665 3' -53.9 NC_005882.1 + 353 0.66 0.687952
Target:  5'- uCCGC-AGCC-GUCGAUGuaauGCCGcagaAUCGg -3'
miRNA:   3'- -GGCGaUUGGaCAGCUGCu---CGGC----UAGC- -5'
27665 3' -53.9 NC_005882.1 + 448 0.7 0.499736
Target:  5'- gCCGCUcgccaacgcGACCUGUUcGCGAGCCccacuucuaccGAUUGa -3'
miRNA:   3'- -GGCGA---------UUGGACAGcUGCUCGG-----------CUAGC- -5'
27665 3' -53.9 NC_005882.1 + 3543 0.74 0.268639
Target:  5'- gCCGCgGGCCUG--GGCGuGCCGGUCGu -3'
miRNA:   3'- -GGCGaUUGGACagCUGCuCGGCUAGC- -5'
27665 3' -53.9 NC_005882.1 + 4705 0.67 0.676818
Target:  5'- gCUGUUGACCcGcUCG-CGGGCCGGUa- -3'
miRNA:   3'- -GGCGAUUGGaC-AGCuGCUCGGCUAgc -5'
27665 3' -53.9 NC_005882.1 + 5037 0.69 0.553804
Target:  5'- aCGU--ACCUGUC-ACGAGCUGcUCGa -3'
miRNA:   3'- gGCGauUGGACAGcUGCUCGGCuAGC- -5'
27665 3' -53.9 NC_005882.1 + 6336 0.66 0.731813
Target:  5'- aCGCaaacGCCgUGUCGAC--GCCGGUCa -3'
miRNA:   3'- gGCGau--UGG-ACAGCUGcuCGGCUAGc -5'
27665 3' -53.9 NC_005882.1 + 6995 0.69 0.53193
Target:  5'- -aGCUGACCggccaaacCGGCGAGCUGAagcUCGa -3'
miRNA:   3'- ggCGAUUGGaca-----GCUGCUCGGCU---AGC- -5'
27665 3' -53.9 NC_005882.1 + 8792 0.67 0.676818
Target:  5'- gCCGaUGACCgggcUGUCGACGugguGGCCGAa-- -3'
miRNA:   3'- -GGCgAUUGG----ACAGCUGC----UCGGCUagc -5'
27665 3' -53.9 NC_005882.1 + 11168 0.69 0.542831
Target:  5'- uCCGCUgccagaagccGACCU-UUG-CGAGCUGAUCGu -3'
miRNA:   3'- -GGCGA----------UUGGAcAGCuGCUCGGCUAGC- -5'
27665 3' -53.9 NC_005882.1 + 12185 0.66 0.742547
Target:  5'- cCCGCgauCCaGUCGACG-GUCGAgggCa -3'
miRNA:   3'- -GGCGauuGGaCAGCUGCuCGGCUa--Gc -5'
27665 3' -53.9 NC_005882.1 + 12327 0.72 0.363315
Target:  5'- gCGCgUGACggCUGcCGGCGGcGCCGAUCGg -3'
miRNA:   3'- gGCG-AUUG--GACaGCUGCU-CGGCUAGC- -5'
27665 3' -53.9 NC_005882.1 + 14147 0.66 0.699031
Target:  5'- aCGUUcGCCUGgaUCGGCGucuucGUCGGUCGc -3'
miRNA:   3'- gGCGAuUGGAC--AGCUGCu----CGGCUAGC- -5'
27665 3' -53.9 NC_005882.1 + 14288 0.72 0.372175
Target:  5'- gCCGCUgcucuugacGACCuUGUCGACG-GCCGcggCGg -3'
miRNA:   3'- -GGCGA---------UUGG-ACAGCUGCuCGGCua-GC- -5'
27665 3' -53.9 NC_005882.1 + 14415 0.67 0.665639
Target:  5'- gCGUUGGCUUGUCcuggGGCGAagcaGCCGAUUc -3'
miRNA:   3'- gGCGAUUGGACAG----CUGCU----CGGCUAGc -5'
27665 3' -53.9 NC_005882.1 + 15059 0.66 0.699031
Target:  5'- gCGCauGgCUGUCGcGCGcGCUGAUCGa -3'
miRNA:   3'- gGCGauUgGACAGC-UGCuCGGCUAGC- -5'
27665 3' -53.9 NC_005882.1 + 15717 0.66 0.687952
Target:  5'- gCGCUuGCC-GUCGucCuGGCCGGUCGc -3'
miRNA:   3'- gGCGAuUGGaCAGCu-GcUCGGCUAGC- -5'
27665 3' -53.9 NC_005882.1 + 16281 0.71 0.43817
Target:  5'- uCgGCcGGCUUGcCGACGAcGUCGAUCGg -3'
miRNA:   3'- -GgCGaUUGGACaGCUGCU-CGGCUAGC- -5'
27665 3' -53.9 NC_005882.1 + 16371 0.7 0.498677
Target:  5'- aCgGCUuuccgGACCUGUCGAUGugcuucuGGCCGA-CGa -3'
miRNA:   3'- -GgCGA-----UUGGACAGCUGC-------UCGGCUaGC- -5'
27665 3' -53.9 NC_005882.1 + 16800 0.81 0.096029
Target:  5'- uCCGCUggauuugcGACCUGaacuUCGACGGcGCCGAUCGa -3'
miRNA:   3'- -GGCGA--------UUGGAC----AGCUGCU-CGGCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.